Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq162 168 6e-37 >seq162 Length=246154 Score = 168 bits (186), Expect = 6e-37 Identities = 492/745 (66%), Gaps = 26/745 (3%) Strand=Plus/Minus Query 20781 ACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACTCAGA-TCCGC 20839 |||||||| ||||||| ||| | || | || |||||||| || |||| | || | Sbjct 68332 ACGGCCATGTCCATCTTTATCTTAGGGTAAGGATCGTAGCCGATGAC-CTCAAAGTCTTC 68274 Query 20840 GCGCGTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAAACGGACG 20899 | ||| || || | | | ||||||| | || |||||| |||||||| || Sbjct 68273 GTATCGAAATTCTTCAATGTTCTCGACCTTTCGCTTGATTTTCAGCTTTGGAAACGGTCG 68214 Query 20900 CGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTC 20959 || | | ||||| | || |||||||| ||||| || || || | ||| Sbjct 68213 TGGCTTGCGTTCTAGCTGCTCCTTTAGTGGATCAACATGGTTAAGATACACATGAGTGTC 68154 Query 20960 ACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGT 21019 |||| |||||| ||||| || |||| ||| |||||| || || || |||| | || Sbjct 68153 GCCCATGGTGTGGACAAAATCGCCCGTCTTCAAGCCCGTTACATGTGCAATCATGTGGGT 68094 Query 21020 CAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTG 21079 || ||||| ||| ||||||||| || || || || ||||||||||||||| || ||| Sbjct 68093 GAGCAGGGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTG 68034 Query 21080 GTACAGCTGGCAGGACAGCTCCCCCC------GAGCCACGTAAAACTGACACAAAAC-GT 21132 |||||||||||||| ||||| || | ||| ||||| || || ||| | || Sbjct 68033 ATACAGCTGGCAGGAGAGCTCTCCTCGAGTTTGAGAGACGTAGAATTG-TGCAAGGCAGT 67975 Query 21133 GACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGC 21192 | || || || | ||||| | | |||| ||| ||||| ||| |||||| ||||| Sbjct 67974 GGCAGGGGGGTAATGCCATTTTTGGTATGTCCAGGGGATTCCAGGCGGACATAATGATGC 67915 Query 21193 GCCGATCG--TGGGGCCGCCTGTTAATTAGATCC--ACCACGTAACGCAGCTGGTCCACC 21248 | |||||| ||| || | || | ||| | || | |||| |||||| | Sbjct 67914 GACGATCGGATGGATTATCC--CTGAT--GGTCCTAATTACCTGGCGCAACTGGTCGATT 67859 Query 21249 CCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGG 21308 |||| || ||||| ||||| | ||||| || ||||| |||| |||||| Sbjct 67858 CCCTTGCCGCTGTAGTCATCGTCGCAGGTGCCATACTCGGCACCAAAGTGTCGCCACTGA 67799 Query 21309 AACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAA 21368 || || || || || |||||||| ||| || ||||||| | |||| || | | | Sbjct 67798 AAGCCATAGACAGGACCCAGATCTCCCACGGCGCGGTCCGTGTGGCCCAGCTTGTCTAGA 67739 Query 21369 AAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG--CCGCGGC-GCGACAG-TTCGGT 21424 || | | || | || | |||||||| | ||| | || | || | || |||| Sbjct 67738 AACTCTCTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTTCGCCTGCAAGAGCTTCGCA 67679 Query 21425 GGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACAC 21484 ||| | ||| | |||||| |||| |||||||||||| ||| | ||||| Sbjct 67678 TCTGTCTTTCCGGCC----ACAAACCATAGCAGCTCCTCCACGACCGCCCGAAAGAACAC 67623 Query 21485 CCTTTTGGTGGTTAACAGAGGAAAC 21509 || |||||||| | ||| |||||| Sbjct 67622 CCGCTTGGTGGTCAGCAGGGGAAAC 67598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427765911838800