Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 7e-16 seq111 89.7 4e-13 >seq3 Length=3134003 Score = 98.7 bits (108), Expect = 7e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGG 33623 ||||||||| |||| |||||||||||||| || |||||| | ||||||| |||||||| Sbjct 3112745 CGCATACCACAGATCGGCGACAAGTTTGCCTCTCGTCACGGGC-AGAAGGGAACGTGCGG 3112803 Query 33624 CATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGT 33683 ||| ||| ||| ||| ||||| ||||| ||| || ||| ||| || | | Sbjct 3112804 CATCCAGTATCGGCAGGAGGATATGCCCTTCACATGCGAGGGACTGGCCCCCGATATCAT 3112863 Query 33684 CATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716 |||||| || ||||| ||||||| || ||||| Sbjct 3112864 CATCAATCCCCATGCCATCCCCTCTCGTATGAC 3112896 >seq111 Length=362587 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCA--TTTGCGGCCATATTCTGGC 22807 |||||||| || || ||||| || | || | | | || ||||| | || || |||| Sbjct 244802 GCCTTTGCAGCCGTGGAAGGAATCTTCTT--CAGCGGCAGCTTTGCCTCGATCTTTTGGC 244745 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| ||| |||||||| || || | || ||||||||| |||| ||||||| Sbjct 244744 TGAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTGACG 244685 Query 22868 AAGGTCTACACTGTGACTTTGC 22889 ||||||| ||||| |||||||| Sbjct 244684 AAGGTCTCCACTGCGACTTTGC 244663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356225199009805