Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq3 98.7 7e-16
seq111 89.7 4e-13
>seq3
Length=3134003
Score = 98.7 bits (108), Expect = 7e-16
Identities = 115/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGG 33623
||||||||| |||| |||||||||||||| || |||||| | ||||||| ||||||||
Sbjct 3112745 CGCATACCACAGATCGGCGACAAGTTTGCCTCTCGTCACGGGC-AGAAGGGAACGTGCGG 3112803
Query 33624 CATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGT 33683
||| ||| ||| ||| ||||| ||||| ||| || ||| ||| || | |
Sbjct 3112804 CATCCAGTATCGGCAGGAGGATATGCCCTTCACATGCGAGGGACTGGCCCCCGATATCAT 3112863
Query 33684 CATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716
|||||| || ||||| ||||||| || |||||
Sbjct 3112864 CATCAATCCCCATGCCATCCCCTCTCGTATGAC 3112896
>seq111
Length=362587
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/142 (75%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCA--TTTGCGGCCATATTCTGGC 22807
|||||||| || || ||||| || | || | | | || ||||| | || || ||||
Sbjct 244802 GCCTTTGCAGCCGTGGAAGGAATCTTCTT--CAGCGGCAGCTTTGCCTCGATCTTTTGGC 244745
Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867
||||||| ||| |||||||| || || | || ||||||||| |||| |||||||
Sbjct 244744 TGAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTGACG 244685
Query 22868 AAGGTCTACACTGTGACTTTGC 22889
||||||| ||||| ||||||||
Sbjct 244684 AAGGTCTCCACTGCGACTTTGC 244663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356225199009805
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |