Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq328 114 1e-20
seq234 95.1 1e-14
>seq328
Length=165906
Score = 114 bits (126), Expect = 1e-20
Identities = 689/1096 (63%), Gaps = 24/1096 (2%)
Strand=Plus/Minus
Query 152719 CGACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCT 152778
|||| |||||||| | |||||| || || || || ||||| ||||| || || |
Sbjct 107404 CGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCGGTTT 107345
Query 152779 TGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGG 152838
| || ||| || |||| | | | || | || | || || | | |||| ||||
Sbjct 107344 TTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGCTCGG 107285
Query 152839 CCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGT 152898
||| | || |||||||| |||||||||||||||||||| |||||||| || ||||| |
Sbjct 107284 CCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATCT 107225
Query 152899 CGATCATGAATTTTCCGTTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTAA 152958
|| || |||| | || | |||||| | ||| | || || | ||
Sbjct 107224 TAATTGTGGATTTAAC--TG-------AAATTTCCCACACTGTTTTATAAAGATCGCGAA 107174
Query 152959 TGTTGTCGGGAA---TTTC-ATCTATGGAAGCTATCGATCCTCGGTTTGCCATGATCCTT 153014
|| | ||||| |||| || | | || || || || | ||| || || |
Sbjct 107173 CATTTTGGGGAATAGTTTCAATATTTTGA----ATGGAGCCCCTACTTGAAATTATTTTA 107118
Query 153015 TTCCGCATACTACTTGTGTACAGATTCAATGCGATTAGATCATCGACCAAGTAGCGGTTG 153074
|| |||| | | | | ||| | ||| ||| | || | | |||
Sbjct 107117 TTTTTCATATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTG 107058
Query 153075 ACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACGGTTCA 153134
|| ||||||||||| || || ||||| |||||| | | | |||| | | | |||||
Sbjct 107057 ACCACTTGAAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCG 106998
Query 153135 AACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGC 153194
|| || ||||| ||| | ||||| || || | || || ||||| || || | |
Sbjct 106997 AATGATTCGTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAAC 106938
Query 153195 AACGAATTACGTAATCCGTGTTTTTGTATGTTCATC-TTCAATTGTGACCAGTCCCATAA 153253
|||||||| | | ||||||||||| ||| || || |||| | | ||| ||||||||
Sbjct 106937 AACGAATTCCTAATTCCGTGTTTTTTAATG-TCTTCTTTCAGGTTTTGCCAATCCCATAA 106879
Query 153254 CGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACC 153313
|| || | || ||||| ||| ||||| | || || | ||| | || ||
Sbjct 106878 GTTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTCC 106819
Query 153314 GGCAAACGTGCTATACGG-CTCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGG 153372
| | || ||||| | | | | || | |||| |||| || || | ||
Sbjct 106818 TTTATAGGTTTCGTACGGACCAAATATTTGA-GAAAGTTCACAACTAGCTTCTAAAGCCC 106760
Query 153373 CATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACG 153432
|| ||| | |||||| | || |||| ||| | | | || | || || | || |
Sbjct 106759 CAAAATAAATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGG 106700
Query 153433 GTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGAT 153492
| | |||| | | || || || || |||||||||| || || || || |||||||
Sbjct 106699 GAAAACGCATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGAT 106640
Query 153493 GGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTAT 153552
| | | ||| ||||| || || || | || || | ||| ||| || |||||||
Sbjct 106639 GCCTTAAATTGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTAT 106580
Query 153553 TTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGTTCCAT 153612
| | | | | | ||| ||| ||| | || || |||||||| ||| |
Sbjct 106579 TAAGATTTTTAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTT 106520
Query 153613 -TAATG--ATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGG 153669
| || | | | |||| | ||||| || || || |||||||| || | || || |
Sbjct 106519 CTGGTGTTACAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAG 106460
Query 153670 GGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTAC 153729
| || | || | || ||||| | ||| ||||| |||||||| || ||| |||
Sbjct 106459 GTGCAGAGTACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTT 106400
Query 153730 TTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGG 153789
||||||||| || | ||||| | ||||| | ||||||||||| | || |||||
Sbjct 106399 GTTGATTGCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAA 106340
Query 153790 CTTGAATTTCTATAAT 153805
|||| |||||||||
Sbjct 106339 CTTGCGATTCTATAAT 106324
>seq234
Length=227530
Score = 95.1 bits (104), Expect = 1e-14
Identities = 166/237 (70%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | |||| || || || | || ||||| || ||||||||||||||
Sbjct 9908 GCCACCACGAAGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAG- 9966
Query 139597 CATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|| ||| ||| ||||| | ||||| ||||| |||||| ||||| ||||| |||
Sbjct 9967 -ATAGTGTTCGGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGA 10025
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713
|| || ||||||||||| ||| | || | ||| | | ||| | || || | || ||
Sbjct 10026 GGAATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTC 10084
Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTA 139770
||||||| || | |||||||| || | || ||||| || || ||||| | |||
Sbjct 10085 GACCTCAAGAGTTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCATGGTTTA 10141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496052001452000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |