Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq328 114 1e-20 seq234 95.1 1e-14 >seq328 Length=165906 Score = 114 bits (126), Expect = 1e-20 Identities = 689/1096 (63%), Gaps = 24/1096 (2%) Strand=Plus/Minus Query 152719 CGACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCT 152778 |||| |||||||| | |||||| || || || || ||||| ||||| || || | Sbjct 107404 CGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCGGTTT 107345 Query 152779 TGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGG 152838 | || ||| || |||| | | | || | || | || || | | |||| |||| Sbjct 107344 TTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGCTCGG 107285 Query 152839 CCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGT 152898 ||| | || |||||||| |||||||||||||||||||| |||||||| || ||||| | Sbjct 107284 CCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATCT 107225 Query 152899 CGATCATGAATTTTCCGTTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTAA 152958 || || |||| | || | |||||| | ||| | || || | || Sbjct 107224 TAATTGTGGATTTAAC--TG-------AAATTTCCCACACTGTTTTATAAAGATCGCGAA 107174 Query 152959 TGTTGTCGGGAA---TTTC-ATCTATGGAAGCTATCGATCCTCGGTTTGCCATGATCCTT 153014 || | ||||| |||| || | | || || || || | ||| || || | Sbjct 107173 CATTTTGGGGAATAGTTTCAATATTTTGA----ATGGAGCCCCTACTTGAAATTATTTTA 107118 Query 153015 TTCCGCATACTACTTGTGTACAGATTCAATGCGATTAGATCATCGACCAAGTAGCGGTTG 153074 || |||| | | | | ||| | ||| ||| | || | | ||| Sbjct 107117 TTTTTCATATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTG 107058 Query 153075 ACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACGGTTCA 153134 || ||||||||||| || || ||||| |||||| | | | |||| | | | ||||| Sbjct 107057 ACCACTTGAAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCG 106998 Query 153135 AACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGC 153194 || || ||||| ||| | ||||| || || | || || ||||| || || | | Sbjct 106997 AATGATTCGTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAAC 106938 Query 153195 AACGAATTACGTAATCCGTGTTTTTGTATGTTCATC-TTCAATTGTGACCAGTCCCATAA 153253 |||||||| | | ||||||||||| ||| || || |||| | | ||| |||||||| Sbjct 106937 AACGAATTCCTAATTCCGTGTTTTTTAATG-TCTTCTTTCAGGTTTTGCCAATCCCATAA 106879 Query 153254 CGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACC 153313 || || | || ||||| ||| ||||| | || || | ||| | || || Sbjct 106878 GTTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTCC 106819 Query 153314 GGCAAACGTGCTATACGG-CTCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGG 153372 | | || ||||| | | | | || | |||| |||| || || | || Sbjct 106818 TTTATAGGTTTCGTACGGACCAAATATTTGA-GAAAGTTCACAACTAGCTTCTAAAGCCC 106760 Query 153373 CATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACG 153432 || ||| | |||||| | || |||| ||| | | | || | || || | || | Sbjct 106759 CAAAATAAATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGG 106700 Query 153433 GTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGAT 153492 | | |||| | | || || || || |||||||||| || || || || ||||||| Sbjct 106699 GAAAACGCATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGAT 106640 Query 153493 GGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTAT 153552 | | | ||| ||||| || || || | || || | ||| ||| || ||||||| Sbjct 106639 GCCTTAAATTGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTAT 106580 Query 153553 TTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGTTCCAT 153612 | | | | | | ||| ||| ||| | || || |||||||| ||| | Sbjct 106579 TAAGATTTTTAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTT 106520 Query 153613 -TAATG--ATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGG 153669 | || | | | |||| | ||||| || || || |||||||| || | || || | Sbjct 106519 CTGGTGTTACAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAG 106460 Query 153670 GGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTAC 153729 | || | || | || ||||| | ||| ||||| |||||||| || ||| ||| Sbjct 106459 GTGCAGAGTACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTT 106400 Query 153730 TTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGG 153789 ||||||||| || | ||||| | ||||| | ||||||||||| | || ||||| Sbjct 106399 GTTGATTGCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAA 106340 Query 153790 CTTGAATTTCTATAAT 153805 |||| ||||||||| Sbjct 106339 CTTGCGATTCTATAAT 106324 >seq234 Length=227530 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||| || || || | || ||||| || |||||||||||||| Sbjct 9908 GCCACCACGAAGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAG- 9966 Query 139597 CATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || ||| ||| ||||| | ||||| ||||| |||||| ||||| ||||| ||| Sbjct 9967 -ATAGTGTTCGGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGA 10025 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || ||||||||||| ||| | || | ||| | | ||| | || || | || || Sbjct 10026 GGAATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTC 10084 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTA 139770 ||||||| || | |||||||| || | || ||||| || || ||||| | ||| Sbjct 10085 GACCTCAAGAGTTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCATGGTTTA 10141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052001452000