Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq328 594 7e-165 seq111 145 1e-29 >seq328 Length=165906 Score = 594 bits (658), Expect = 7e-165 Identities = 1268/1876 (68%), Gaps = 22/1876 (1%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | ||| ||||| || | | || || ||||| || |||| ||| |||||||| Sbjct 107408 TTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCG 107349 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 |||||||| || |||| | | ||||| || || | ||| || | || Sbjct 107348 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGC 107289 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || | ||| | ||| | || ||||||||||| || || || || || || |||||| Sbjct 107288 TCGGCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCC 107229 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 78947 || || || | | || || ||||||||| | |||||||||| |||| || || Sbjct 107228 ATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCG-AACATT 107170 Query 78948 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 || |||| |||| |||| |||||||| || | | || || || |||| || || Sbjct 107169 TTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCAT 107110 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064 || |||| |||||| | ||| |||||| | || | | ||| |||| || ||||| Sbjct 107109 ATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTG 107050 Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 |||||| ||||| ||||||| | || || |||||| | ||||||||||| | ||||| Sbjct 107049 AAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTC 106990 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 ||||| |||| |||||| ||||| ||||| || |||||||| || || || || ||| Sbjct 106989 GTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATT 106930 Query 79185 TCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCA-AAGATCAGACG 79243 |||| |||| | | | || | ||||| || || ||||||||| ||| || | | Sbjct 106929 CCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAGTTC-GTTG 106871 Query 79244 GGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGA--TCCTGTGTA 79301 | || ||| | ||||||||||||||| || || || | | || |||| | || Sbjct 106870 GAGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTAC--AGGACTTCCTTTATA 106813 Query 79302 TGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATA 79361 ||||| || || || ||| | | ||||||||| || ||||| || || |||| Sbjct 106812 GGTTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATA 106753 Query 79362 AATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATT 79421 ||| ||||| || || | | || | | |||||| || ||| | ||| || Sbjct 106752 AATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACG 106693 Query 79422 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 79481 | ||||| || ||||| || || ||||||||||| ||||| || || | ||| || Sbjct 106692 CATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAA 106633 Query 79482 ATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||| || | | ||||||||| | || ||||| || || ||||| |||||||| ||||| Sbjct 106632 ATTGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATT 106573 Query 79542 CCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATC---TAT 79598 | | | |||| ||||| |||| ||| ||||||||| | || | | Sbjct 106572 TTTAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTTCTGGTGT 106513 Query 79599 TACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658 |||||||||||| | || | || || | ||| ||||| || | ||||| || | | Sbjct 106512 TACAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGA 106453 Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 || | | ||||| || || | ||||| || ||||| || || | |||||||||||| Sbjct 106452 GTACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATT 106393 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 |||||| | ||||| | ||||||| |||| ||| | || |||||||||||| || || Sbjct 106392 GCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGA 106333 Query 79779 TTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTC 79837 ||||||||| || ||| |||||| |||| || | | | | || | | | ||| Sbjct 106332 TTCTATAATGGCAAACCATAACGACT-GAGCTTTCACTGT--TCGATTAGCACGTCCCTC 106276 Query 79838 TT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGG 79895 || || |||| ||| | | | || || | || ||||||||||| | | |||||| Sbjct 106275 TTGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGG 106216 Query 79896 ACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAG 79955 ||||| | ||||||||||||||||| | | ||| | | || |||||||| || || Sbjct 106215 ACATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCATGAAAAG 106156 Query 79956 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 80015 ||| |||||||| | ||| ||| ||||| | | || | || || ||||| || || Sbjct 106155 ATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTCCAGTGTT 106096 Query 80016 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 80075 |||| || || | || | | || ||| |||||||| || || || || || || | Sbjct 106095 TCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAA 106036 Query 80076 AACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 80135 | || |||| ||| ||||||||||| | |||| || |||||| | ||||| Sbjct 106035 GGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAATACTCT 105976 Query 80136 CAACATTGGAA-TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGG 80194 | |||||||| |||| ||||| || ||||| || || || | || | | || ||| Sbjct 105975 TAGCATTGGAACTAAT-CCATTTGAAGTACCGTTCGTTCCACATATGGAAGTGCCTTTGG 105917 Query 80195 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254 |||||||| | || || || ||||| || || ||| || || | ||| ||| Sbjct 105916 CACGAATACAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCATTGCACATT 105857 Query 80255 GTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGC 80314 ||| | | | | | || || || || ||| | |||| | | |||||||| Sbjct 105856 GTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCATTGTCAAAAGAAAACATG 105797 Query 80315 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 80374 || | ||| | ||| | || | ||| ||| | || || || || |||||||| Sbjct 105796 AGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCATGCGTAAAAT 105737 Query 80375 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTC 80434 || || || ||||| ||||| || |||| ||||| | ||||| | |||||| | Sbjct 105736 ATCGCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGTCTCCATGAATAC 105677 Query 80435 CTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 80494 | | ||||| ||||||| |||||| || || | || | || || ||||||||| | Sbjct 105676 CAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTTCCCATTTATTTTAA 105617 Query 80495 ACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 80554 || || || || | || ||||| ||||||||||| || || || || || | Sbjct 105616 GTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCGAAATCACGATCAT 105557 Query 80555 AAATAATAACCGAGTT 80570 |||||||| | ||||| Sbjct 105556 AAATAATAGCAGAGTT 105541 >seq111 Length=362587 Score = 145 bits (160), Expect = 1e-29 Identities = 292/429 (68%), Gaps = 7/429 (2%) Strand=Plus/Plus Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 || || |||||||| ||||| ||||| | | || || |||||||| || || || ||| Sbjct 244663 GCAAAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCG 244722 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAAAAGAAGA 50080 ||||| ||||||||||| || |||||||| || || ||||| || | | | ||||||| Sbjct 244723 GGCATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTG--AAGAAGA 244780 Query 50081 TTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCTGTCATG--TA 50137 ||||||| || || |||||||||| || | ||| || | ||| || | || | || Sbjct 244781 TTCCTTCCACGGCTGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATA 244840 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 |||| | ||||| || ||||| |||||| ||||| || || | ||||| | Sbjct 244841 TCCAGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGA 244900 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 | | |||| || || || | || || || || | | || ||||| | Sbjct 244901 ACAAGTAGTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCT 244960 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 | || || | ||| || ||||| ||||| || |||||||| || | ||||| || |||| Sbjct 244961 CGGAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGATCT 245020 Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 |||| || || || || || | | ||| || || || || || || ||| || | Sbjct 245021 GCACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGA 245080 Query 50378 AAAACGCCA 50386 | || |||| Sbjct 245081 AGAAGGCCA 245089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251426873400