Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq328 594 7e-165
seq111 145 1e-29
>seq328
Length=165906
Score = 594 bits (658), Expect = 7e-165
Identities = 1268/1876 (68%), Gaps = 22/1876 (1%)
Strand=Plus/Minus
Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768
||||| | ||| ||||| || | | || || ||||| || |||| ||| ||||||||
Sbjct 107408 TTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCG 107349
Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828
|||||||| || |||| | | ||||| || || | ||| || | ||
Sbjct 107348 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGC 107289
Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888
|| || | ||| | ||| | || ||||||||||| || || || || || || ||||||
Sbjct 107288 TCGGCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCC 107229
Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 78947
|| || || | | || || ||||||||| | |||||||||| |||| || ||
Sbjct 107228 ATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCG-AACATT 107170
Query 78948 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004
|| |||| |||| |||| |||||||| || | | || || || |||| || ||
Sbjct 107169 TTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCAT 107110
Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064
|| |||| |||||| | ||| |||||| | || | | ||| |||| || |||||
Sbjct 107109 ATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTG 107050
Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124
|||||| ||||| ||||||| | || || |||||| | ||||||||||| | |||||
Sbjct 107049 AAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTC 106990
Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184
||||| |||| |||||| ||||| ||||| || |||||||| || || || || |||
Sbjct 106989 GTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATT 106930
Query 79185 TCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCA-AAGATCAGACG 79243
|||| |||| | | | || | ||||| || || ||||||||| ||| || | |
Sbjct 106929 CCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAGTTC-GTTG 106871
Query 79244 GGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGA--TCCTGTGTA 79301
| || ||| | ||||||||||||||| || || || | | || |||| | ||
Sbjct 106870 GAGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTAC--AGGACTTCCTTTATA 106813
Query 79302 TGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATA 79361
||||| || || || ||| | | ||||||||| || ||||| || || ||||
Sbjct 106812 GGTTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATA 106753
Query 79362 AATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATT 79421
||| ||||| || || | | || | | |||||| || ||| | ||| ||
Sbjct 106752 AATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACG 106693
Query 79422 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 79481
| ||||| || ||||| || || ||||||||||| ||||| || || | ||| ||
Sbjct 106692 CATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAA 106633
Query 79482 ATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541
||| || | | ||||||||| | || ||||| || || ||||| |||||||| |||||
Sbjct 106632 ATTGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATT 106573
Query 79542 CCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATC---TAT 79598
| | | |||| ||||| |||| ||| ||||||||| | || | |
Sbjct 106572 TTTAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTTCTGGTGT 106513
Query 79599 TACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658
|||||||||||| | || | || || | ||| ||||| || | ||||| || | |
Sbjct 106512 TACAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGA 106453
Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718
|| | | ||||| || || | ||||| || ||||| || || | ||||||||||||
Sbjct 106452 GTACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATT 106393
Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778
|||||| | ||||| | ||||||| |||| ||| | || |||||||||||| || ||
Sbjct 106392 GCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGA 106333
Query 79779 TTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTC 79837
||||||||| || ||| |||||| |||| || | | | | || | | | |||
Sbjct 106332 TTCTATAATGGCAAACCATAACGACT-GAGCTTTCACTGT--TCGATTAGCACGTCCCTC 106276
Query 79838 TT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGG 79895
|| || |||| ||| | | | || || | || ||||||||||| | | ||||||
Sbjct 106275 TTGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGG 106216
Query 79896 ACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAG 79955
||||| | ||||||||||||||||| | | ||| | | || |||||||| || ||
Sbjct 106215 ACATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCATGAAAAG 106156
Query 79956 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 80015
||| |||||||| | ||| ||| ||||| | | || | || || ||||| || ||
Sbjct 106155 ATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTCCAGTGTT 106096
Query 80016 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 80075
|||| || || | || | | || ||| |||||||| || || || || || || |
Sbjct 106095 TCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAA 106036
Query 80076 AACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 80135
| || |||| ||| ||||||||||| | |||| || |||||| | |||||
Sbjct 106035 GGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAATACTCT 105976
Query 80136 CAACATTGGAA-TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGG 80194
| |||||||| |||| ||||| || ||||| || || || | || | | || |||
Sbjct 105975 TAGCATTGGAACTAAT-CCATTTGAAGTACCGTTCGTTCCACATATGGAAGTGCCTTTGG 105917
Query 80195 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254
|||||||| | || || || ||||| || || ||| || || | ||| |||
Sbjct 105916 CACGAATACAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCATTGCACATT 105857
Query 80255 GTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGC 80314
||| | | | | | || || || || ||| | |||| | | ||||||||
Sbjct 105856 GTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCATTGTCAAAAGAAAACATG 105797
Query 80315 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 80374
|| | ||| | ||| | || | ||| ||| | || || || || ||||||||
Sbjct 105796 AGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCATGCGTAAAAT 105737
Query 80375 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTC 80434
|| || || ||||| ||||| || |||| ||||| | ||||| | |||||| |
Sbjct 105736 ATCGCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGTCTCCATGAATAC 105677
Query 80435 CTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 80494
| | ||||| ||||||| |||||| || || | || | || || ||||||||| |
Sbjct 105676 CAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTTCCCATTTATTTTAA 105617
Query 80495 ACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 80554
|| || || || | || ||||| ||||||||||| || || || || || |
Sbjct 105616 GTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCGAAATCACGATCAT 105557
Query 80555 AAATAATAACCGAGTT 80570
|||||||| | |||||
Sbjct 105556 AAATAATAGCAGAGTT 105541
>seq111
Length=362587
Score = 145 bits (160), Expect = 1e-29
Identities = 292/429 (68%), Gaps = 7/429 (2%)
Strand=Plus/Plus
Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022
|| || |||||||| ||||| ||||| | | || || |||||||| || || || |||
Sbjct 244663 GCAAAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCG 244722
Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAAAAGAAGA 50080
||||| ||||||||||| || |||||||| || || ||||| || | | | |||||||
Sbjct 244723 GGCATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTG--AAGAAGA 244780
Query 50081 TTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCTGTCATG--TA 50137
||||||| || || |||||||||| || | ||| || | ||| || | || | ||
Sbjct 244781 TTCCTTCCACGGCTGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATA 244840
Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197
|||| | ||||| || ||||| |||||| ||||| || || | ||||| |
Sbjct 244841 TCCAGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGA 244900
Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257
| | |||| || || || | || || || || | | || ||||| |
Sbjct 244901 ACAAGTAGTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCT 244960
Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317
| || || | ||| || ||||| ||||| || |||||||| || | ||||| || ||||
Sbjct 244961 CGGAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGATCT 245020
Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377
|||| || || || || || | | ||| || || || || || || ||| || |
Sbjct 245021 GCACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGA 245080
Query 50378 AAAACGCCA 50386
| || ||||
Sbjct 245081 AGAAGGCCA 245089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718251426873400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |