Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq35 98.7 8e-16 seq6 96.9 3e-15 seq234 87.8 1e-12 seq23 82.4 6e-11 >seq35 Length=832945 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| || || || | || |||||||| | ||| |||||| || | ||||| |||| Sbjct 773421 CGCCACCGCGAAGACGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGG 773480 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| |||||| |||| |||| || ||||||||||| ||||| ||||| ||||| | | Sbjct 773481 ACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGG 773540 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | || || || || |||| | ||||| | | | ||||| | ||||| Sbjct 773541 GAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGA 773600 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || || || || || ||||| || || ||||| Sbjct 773601 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773649 >seq6 Length=3104374 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||| || | || |||||| || | ||||| |||||| Sbjct 2898480 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2898421 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| || |||||||| || |||| ||||| ||||| | || Sbjct 2898420 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 2898361 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | ||||| | | | ||||| | |||||| Sbjct 2898360 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 2898301 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 || | || || || || || || ||||||||||||||||||||||||||| Sbjct 2898300 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATTTTC 2898250 >seq234 Length=227530 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| ||||| || | | |||||||| | ||| |||||| || | || ||||| | Sbjct 9907 CGCCACCACGAAGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAG 9966 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | | ||| || | || |||||||||||||| || || ||||| || |||||||| | | Sbjct 9967 ATAGTGTTCGGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAG 10026 Query 43001 GCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 | | |||||||| || ||| ||| ||||||| | | | || || | ||| Sbjct 10027 GAATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCG 10085 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | ||||| || || || || || || || ||||| || ||||| Sbjct 10086 ACCTCAAGAGTTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCAT 10135 >seq23 Length=1278451 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| |||| |||||| || | ||||| || || | ||||| | || || Sbjct 1263424 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 1263483 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || |||||||| || || | ||||| || || | || | || || || || Sbjct 1263484 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1263543 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | || || | ||| |||||| | ||| || || | || || ||||| Sbjct 1263544 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTT 1263603 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| |||||||| || ||||| Sbjct 1263604 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| |||| |||||| || | ||||| || || | ||||| | || || Sbjct 1263652 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 1263711 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || |||||||| || || | ||||| || || | || | || || || || Sbjct 1263712 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1263771 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | || || | ||| |||||| | ||| || || | || || ||||| Sbjct 1263772 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTT 1263831 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| |||||||| || ||||| Sbjct 1263832 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| |||| |||||| || | ||||| || || | ||||| | || || Sbjct 1263880 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 1263939 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || |||||||| || || | ||||| || || | || | || || || || Sbjct 1263940 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1263999 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | || || | ||| |||||| | ||| || || | || || ||||| Sbjct 1264000 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTT 1264059 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| |||||||| || ||||| Sbjct 1264060 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381360606232230