Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq35 98.7 8e-16
seq6 96.9 3e-15
seq234 87.8 1e-12
seq23 82.4 6e-11
>seq35
Length=832945
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940
|||| || || || | || |||||||| | ||| |||||| || | ||||| ||||
Sbjct 773421 CGCCACCGCGAAGACGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGG 773480
Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000
|||| |||||| |||| |||| || ||||||||||| ||||| ||||| ||||| | |
Sbjct 773481 ACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGG 773540
Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060
| | || || || || |||| | ||||| | | | ||||| | |||||
Sbjct 773541 GAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGA 773600
Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
| || | || || || || || || || || ||||| || || |||||
Sbjct 773601 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773649
>seq6
Length=3104374
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| |||||||| | | |||||| || | || |||||| || | ||||| ||||||
Sbjct 2898480 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2898421
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || || | || |||| || |||||||| || |||| ||||| ||||| | ||
Sbjct 2898420 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 2898361
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| || || || || |||| | ||||| | | | ||||| | ||||||
Sbjct 2898360 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 2898301
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113
|| | || || || || || || |||||||||||||||||||||||||||
Sbjct 2898300 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATTTTC 2898250
>seq234
Length=227530
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940
|||| ||||| || | | |||||||| | ||| |||||| || | || ||||| |
Sbjct 9907 CGCCACCACGAAGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAG 9966
Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000
| | ||| || | || |||||||||||||| || || ||||| || |||||||| | |
Sbjct 9967 ATAGTGTTCGGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAG 10026
Query 43001 GCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059
| | |||||||| || ||| ||| ||||||| | | | || || | |||
Sbjct 10027 GAATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCG 10085
Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| || | ||||| || || || || || || || ||||| || |||||
Sbjct 10086 ACCTCAAGAGTTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCAT 10135
>seq23
Length=1278451
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
||||||||||| |||| |||||| || | ||||| || || | ||||| | || ||
Sbjct 1263424 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 1263483
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
|| || |||||||| || || | ||||| || || | || | || || || ||
Sbjct 1263484 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1263543
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | || || | ||| |||||| | ||| || || | || || |||||
Sbjct 1263544 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTT 1263603
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||||| ||||| |||||||| || |||||
Sbjct 1263604 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
||||||||||| |||| |||||| || | ||||| || || | ||||| | || ||
Sbjct 1263652 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 1263711
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
|| || |||||||| || || | ||||| || || | || | || || || ||
Sbjct 1263712 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1263771
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | || || | ||| |||||| | ||| || || | || || |||||
Sbjct 1263772 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTT 1263831
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||||| ||||| |||||||| || |||||
Sbjct 1263832 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
||||||||||| |||| |||||| || | ||||| || || | ||||| | || ||
Sbjct 1263880 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 1263939
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
|| || |||||||| || || | ||||| || || | || | || || || ||
Sbjct 1263940 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1263999
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | || || | ||| |||||| | ||| || || | || || |||||
Sbjct 1264000 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTT 1264059
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||||| ||||| |||||||| || |||||
Sbjct 1264060 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381360606232230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |