Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq328 531 7e-146 seq111 123 3e-23 >seq328 Length=165906 Score = 531 bits (588), Expect = 7e-146 Identities = 1258/1888 (67%), Gaps = 30/1888 (2%) Strand=Plus/Minus Query 70784 TTTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGT 70843 ||| || ||||| | |||||| || || | | || || | ||| || |||| ||| | Sbjct 107416 TTTGTTTTTTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAAT 107357 Query 70844 ACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAAT 70903 |||| || |||||||| || |||| | ||||||| || || | ||| | Sbjct 107356 ACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGT 107297 Query 70904 AGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGT 70963 || |||| ||||| | |||| ||| | ||||||||||||||| || || || || || | Sbjct 107296 AGTTAGGCTCGGCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTAT 107237 Query 70964 CTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGC 71022 | |||||||| || || | | || || ||||||||| | |||||||||| |||| Sbjct 107236 CAGCAGCCATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGC 107177 Query 71023 TTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCAATAATCCTA 71079 || || || |||| |||| |||| |||||||| || | | || ||| || || Sbjct 107176 G-AACATTTTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTA 107118 Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 ||||| || || |||| |||||| | ||| |||||| | || | | |||| |||| Sbjct 107117 TTTTTCATATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTG 107058 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || ||||||||||| ||||| ||||||| | || || |||||| | ||||| ||||| Sbjct 107057 ACCACTTGAAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCG 106998 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||| || ||||| |||| |||||| ||||| ||||| || |||||||| || || || Sbjct 106997 AATGATTCGTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAAC 106938 Query 71260 AGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGA 71319 | ||| |||| || ||| | || | ||||| || || ||||| ||| | Sbjct 106937 AACGAATTCCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAG 106878 Query 71320 TCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA--TC 71377 | || ||| ||||| || || | | || || Sbjct 106877 TTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTAC--AGGACTTC 106820 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 || ||| || ||||| || || | ||| | ||||||||||| || ||||| || | Sbjct 106819 CTTTATAGGTTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCC 106760 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATG 71497 || ||||||| ||||| || || | | || | | ||||| || ||| | | Sbjct 106759 CAAAATAAATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGG 106700 Query 71498 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGT 71557 || || | ||||| || ||||| || || |||||||| || ||||| || || | | Sbjct 106699 GAAAACGCATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGAT 106640 Query 71558 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 71617 | || ||| || | | ||||||||| | || ||||| || || ||||| ||||||| Sbjct 106639 GCCTTAAATTGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTAT 106580 Query 71618 TGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCAT 71677 | |||||| | | | |||| ||||| |||| ||| ||||||||| | | Sbjct 106579 TAAGATTTTTAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTT 106520 Query 71678 CTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 71734 || ||||||||| ||| | |||| || || | ||| ||||| || | ||||| || Sbjct 106519 CTGGTGTTACAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAG 106460 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | || | | |||||| || || | |||||| || || || || || | ||||| Sbjct 106459 GTGCAGAGTACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTT 106400 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 ||||||| |||||| | ||||| | ||||||| |||| || | || |||||||||||| Sbjct 106399 GTTGATTGCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAA 106340 Query 71855 TCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTC 71913 || ||||||||||| || ||| | ||||| |||| || | | | || || | | Sbjct 106339 CTTGCGATTCTATAATGGCAAACCATAACGACT-GAGCTTTCACTGT--TCGATTAGCAC 106283 Query 71914 TTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTA 71971 | ||||| || |||| ||| | | | || || | || |||||| ||| | | Sbjct 106282 GTCCCTCTTGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAA 106223 Query 71972 ATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCA 72031 ||||||||||| || ||||||||||| ||||| | | ||| | | || ||||||| Sbjct 106222 GTCCAGGACATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCA 106163 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 | || ||||| |||||||| | ||| ||| ||||| | | || | || || |||| Sbjct 106162 TGAAAAGATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTC 106103 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | || || |||| || || | || | | || ||| |||||||| || || || || | Sbjct 106102 CAGTGTTTCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAA 106043 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 | || | | || || | ||| ||||||||||| | |||| || |||||| Sbjct 106042 TAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAA 105983 Query 72212 AAACTCTCAACATTGGAA-TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 72270 | ||||| | |||||||| |||| ||||| || | ||| || || || | || | | Sbjct 105982 ATACTCTTAGCATTGGAACTAAT-CCATTTGAAGTACCGTTCGTTCCACATATGGAAGTG 105924 Query 72271 CCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 72328 || |||||||||| | || ||| || || ||||| || || ||| || || | Sbjct 105923 CCTTTGGCACGAATACAATGAACATT--AAGTCCAATTCCACCCGCTGATTTGGAAATCA 105866 Query 72329 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAA 72385 ||| ||| ||| | | | | | || || || || ||| || ||| ||| || Sbjct 105865 TTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCAT--TGTCAA 105808 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 |||||||| || | ||| | ||| | || | ||| ||| | || || || | Sbjct 105807 -AAGAAAACATGAGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGG 105749 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 72505 | |||||||| || || || ||||| ||||| || |||| ||||| | ||||| Sbjct 105748 CATGCGTAAAATATCGCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGT 105689 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 | ||| || || | ||||| ||||||| ||| || || || | || | || || Sbjct 105688 CTCCATGAATACCAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTTCC 105629 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 ||||||||| | || ||||| || | || ||||| ||||||||||| || | Sbjct 105628 CATTTATTTTAAGTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCGA 105569 Query 72626 AGTCTCGTTCGTAAATAATAACCGAATT 72653 | || || || ||||||||| | || || Sbjct 105568 AATCACGATCATAAATAATAGCAGAGTT 105541 >seq111 Length=362587 Score = 123 bits (136), Expect = 3e-23 Identities = 285/427 (67%), Gaps = 3/427 (1%) Strand=Plus/Plus Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 || || |||||||| ||||| || || | | || | |||||||| || || || ||| Sbjct 244663 GCAAAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCG 244722 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187 ||||| ||||||||||| || |||||||| || || ||||| || ||||||||| Sbjct 244723 GGCATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATT 244782 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACTGTCATG--TATC 42244 ||||| || || ||||||||||||| | ||| || | || | | || | |||| Sbjct 244783 CCTTCCACGGCTGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 244842 Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304 || | ||||| || ||||| |||||| ||||| || || | ||||| || Sbjct 244843 CAGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGAAC 244902 Query 42305 AGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364 | |||| || || || | || || || || | | || ||||| || Sbjct 244903 AAGTAGTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 244962 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 || || | ||| || ||||| ||||| || |||||||| || | ||||| || | ||| Sbjct 244963 GAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGATCTGC 245022 Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 || || || || || || | | ||| ||||| || || || || ||| || || Sbjct 245023 ACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGAAG 245082 Query 42485 AACGCCA 42491 || |||| Sbjct 245083 AAGGCCA 245089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122966820600