Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq234 100 3e-16 >seq234 Length=227530 Score = 100 bits (110), Expect = 3e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||| || ||||| | || || || || || ||||| ||||| Sbjct 9908 GCCACCACGAAGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAG- 9966 Query 143017 CATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || ||| ||| ||||| | |||||| ||||| |||||| ||||| ||||| ||| Sbjct 9967 -ATAGTGTTCGGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGA 10025 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||||||||| ||| || ||| | | ||| | || |||| ||||| Sbjct 10026 GGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCG 10085 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTA 143190 || |||| ||| | |||||||| || | || ||||| || || ||||| | ||| Sbjct 10086 ACCTCAAGAGTTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCATGGTTTA 10141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507002136589200