Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq111 248 1e-60 seq178 197 2e-45 seq162 183 4e-41 seq358 100 4e-16 >seq111 Length=362587 Score = 248 bits (274), Expect = 1e-60 Identities = 570/849 (67%), Gaps = 32/849 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | |||||||| ||||| || |||||||| ||||| || |||||| | || | Sbjct 245194 AGGCCGAAGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCGAAGGACGCGACAGACT 245135 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| | ||| |||| || | ||||| | || || || ||| | |||||||||| | Sbjct 245134 GGG---CCCGTCTGACCGACAACGAGCGCTACTTCATCTCCCACGTGCTGGCCTTCTTCG 245078 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 | | ||||||||| || || ||||| |||||| | || ||| ||| ||| || | Sbjct 245077 CTGCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTCAGGAGGTGCAGA 245018 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | | |||| | ||||| ||||| ||||| || || |||||||||||||| || | Sbjct 245017 TCACGGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCCATGGAGAACGTGCACTCCGAGA 244958 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCAACGTAAACACATGCTCT 125334 ||||| || ||||||| ||||| || || || | | || | || || | Sbjct 244957 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGAAGGAGCGCGACTACTTG---T 244901 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGG 125390 | || || | || || ||||| || ||||| ||||| | |||| | Sbjct 244900 TCAATGCTGTTGAGACCATGCCGGCT----GTAAAGCGCAAGGCAGACTGGGCCCTGTCC 244845 Query 125391 TGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 ||||| || | || || | || ||||| | | | || || || ||||| Sbjct 244844 TGGAT--AT-CCTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCAGCCGTG 244788 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 || || |||||||| || || ||||| | ||||||||||| |||||||| || ||| Sbjct 244787 GAAGGAATCTTCTTCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTC 244728 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 |||||||| ||||| | |||||| | || ||||| ||||| || || ||||| ||| Sbjct 244727 ATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACTGCGAC 244668 Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG 125627 ||||| | || ||| | | ||||| || | | || | | |||| || Sbjct 244667 TTTGCGGTGCTCATGT---ACCAGCATCTG-GTGCAGCGTCC----CAAGCG-GGAGCGC 244617 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 | || | || | | ||||| || || || |||||||| || |||||| |||| Sbjct 244616 ATTATTGAGATCATTAGGGATGCTGTCGAAATCGAGCAAGAGTTCCTCACCGAAGCCCTG 244557 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || || ||||||||||||||||| || |||| | ||||||| || ||||| || Sbjct 244556 CCCTGCAATTTGATTGGCATGAACTGCGTCCTCATGTCCCAGTACATTGAATTTGTCGCC 244497 Query 125748 GATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGAT 125807 |||||||| ||| ||| | || | ||||| |||||| | ||||||||||| | Sbjct 244496 GATCGTCTGCTGATGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATCCCTTCAGT 244437 Query 125808 TTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAG 125867 |||||| | || || || || || ||||| ||||| || ||||| ||||| |||| Sbjct 244436 TTCATGGATATGATCTCTCTGGACGGAAAGACAAACTTCTTTGAGAAAAAGGTTGCCGAG 244377 Query 125868 TACAAACGC 125876 ||| | ||| Sbjct 244376 TACCAGCGC 244368 >seq178 Length=225394 Score = 197 bits (218), Expect = 2e-45 Identities = 391/576 (68%), Gaps = 22/576 (4%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | |||||||| ||||| || || || | || ||||||||||| || |||||| Sbjct 188396 TTGCGGAAGAAGATGACGCCGGCGCGTGGGCCGCGCAGCGTCTTGTGCGTGGTTGTGGTC 188455 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCG----CAATCAAGCCCGC 127217 |||||||| ||| | || || || || |||||| | | || || || Sbjct 188456 ACAATGTCGGCGTACACGAACGGCGATGGTATA----TGCCCGGCGGCCACCAGACCGGC 188511 Query 127218 AATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCG 127277 | || || ||||||||||| || ||| ||| | | ||| |||| ||||| || Sbjct 188512 CACATGGGCCATATCGGCCATTAGATAGGCGCCCACATCGTCGCAGATCTGACGGAAACG 188571 Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337 ||||| | | || | ||||| | |||| || ||||| | | || ||||| Sbjct 188572 GGCGTAGTCGAGCAGGCGGGAGTAGCACGAGATGCCAGCGATGATAATCTGTGGCTTGAA 188631 Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397 ||||| |||||| || ||| ||||||||| || || ||| || | |||||| Sbjct 188632 GGCCTTGGCCGCCTCGGCCAGCTTGTCATAGTCGATGATGCCCGTCGCGGGGTTCACCTT 188691 Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGT----------TGCGGAA 127445 |||||||||||| ||||| |||| || || || || | ||| || ||| Sbjct 188692 GTACGGCATGCTCTCGAAGAAGATCGAGGTGGCCGAGATGCGTTTGGTGGCCGTGAAGAA 188751 Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT 127505 |||||||| || ||||| || |||||||| || || |||||||| | | ||||||| Sbjct 188752 GCCGTGCGTTAGATGGCCGCCATCGGGCAGGTCCAGGCCCATGATGCGATCGTGCGGACG 188811 Query 127506 AACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565 | || || || |||| | ||||| ||||||||| ||||| || ||| ||| Sbjct 188812 ACAGACGCCCACATAGGCGGCGAGATTGGCGGGCGAGCCCGAATACGGCTGAACATTCAC 188871 Query 127566 TCCCCATTCGGACTCGTTCAAATTGAA-CGCTCTGAGACATCGCTGCTGTGCTAGCAGTT 127624 ||||| | ||| || |||||| |||| | | |||| ||| || ||||||| Sbjct 188872 GCCCCACTGATCGTCGGCCAGATTGAAGAGCTC-ACGGCCGCGCTTCTGGGCCAGCAGTT 188930 Query 127625 CGATGCGATCGATAAACTCGTTACCACCATAGTATC 127660 |||||| || || |||||||| || |||||||||| Sbjct 188931 CGATGCAGTCAATGAACTCGTTGCCGCCATAGTATC 188966 >seq162 Length=246154 Score = 183 bits (202), Expect = 4e-41 Identities = 484/723 (67%), Gaps = 26/723 (4%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCTT-TGTCAAGGGCG-TCATCGAGGAGCTCTTGTGGA 69953 || ||| |||| |||||| || || | || ||||| || | |||||||| | ||| Sbjct 67602 CCCCTGCTGACCACCAAGCGGGTGTTCTTTC--GGGCGGTCGTGGAGGAGCTGCTATGGT 67659 Query 69954 TGATTTCCGGATCGACCAATGCCAAAGAGCTG-AGCCGAAAGGGTGTACACATTTGGAGC 70012 | | ||||| ||| |||| || || || |||| | || ||||||||| Sbjct 67660 TTGTGGCCGGAAAGACAGATGCGAAGCTCTTGCAGGCGAA-GAACGTGCACATTTGGGAT 67718 Query 70013 GGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGA 70071 |||||||| | || | |||| | || ||| ||| ||| ||| | | ||| || Sbjct 67719 GGCAACAGCACCAGA-GAGTTTCTAGACAAGCTGGGCCACACGGACCGCGCCGTGGGAGA 67777 Query 70072 TCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGA 70131 |||||| || || || || || |||||| | |||| || || |||||| |||||| Sbjct 67778 TCTGGGTCCTGTCTATGGCTTTCAGTGGCGACACTTTGGTGCCGAGTATGGCACCTGCGA 67837 Query 70132 GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTCTCAAGA 70190 ||||| || |||| | || || |||| | || | ||| || ||| | Sbjct 67838 CGATGACTACAGCGGCAAGGGAATCGACCAGTTGC-GCCAGGTAATTAGGACCATCAGGG 67896 Query 70191 CCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC--TGCAGATTTGCACCA 70248 |||||| | ||| | | ||| | |||| | | |||||||| || | || |||| Sbjct 67897 ATAATCCATCCGATCGTCGCATCATTATGTCCGCCTGGAATCCCCTGGACAT----ACCA 67952 Query 70249 AA--TGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC-----TCGTAC--GATGG 70299 || ||||| |||| || || ||||| | || || || ||| || || || || Sbjct 67953 AAAATGGCATTACCCCCCTGCCACTGCCTTGCACAATTCTACGTCTCTCAAACTCGA-GG 68011 Query 70300 CAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAA 70359 | | || ||| |||||||| |||| |||||||||||||| || || ||||| || Sbjct 68012 AGAGCTCTCCTGCCAGCTGTATCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCAA 68071 Query 70360 CATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCA 70419 ||| || |||| | || | || ||||||||||| || | || ||| |||| || Sbjct 68072 CATCGCCTCCTATGCCCTGCTCACCCACATGATTGCACATGTAACGGGCTTGAAGACGGG 68131 Query 70420 CGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAA 70479 ||| || || |||||||| |||||| |||| |||||| | || || | || ||| |||| Sbjct 68132 CGATTTTGTCCACACCATGGGCGACACTCATGTGTATCTTAACCATGTTGATCCACTAAA 68191 Query 70480 GGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGA 70539 || ||| || ||||| |||| |||| ||||| |||||| | | || || || || Sbjct 68192 GGAGCAGCTAGAACGCAAGCCACGACCGTTTCCAAAGCTGAAAATCAAGCGAAAGGTCGA 68251 Query 70540 AAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAA 70599 || ||||| ||| |||||||| ||| | | || |||||||| |||||||| Sbjct 68252 GAACATTGAAGAATTTCGATACGAAGACTTTGAGGTCATCGGCTACGATCCTTACCCTAA 68311 Query 70600 GAT 70602 ||| Sbjct 68312 GAT 68314 >seq358 Length=123483 Score = 100 bits (110), Expect = 4e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 50134 CTGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGA 50193 |||||| || || | || ||||||||||| || | || || || || || ||||| Sbjct 103449 CTGGCCGGTGCAGAACATCATCTACACGGCCACCCTGCCCTCGGCTCTGACGGGTGCCGA 103390 Query 50194 TTTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCG 50253 | || |||| || ||| | |||||||| |||||| | || || || || |||||| | || Sbjct 103389 TGTGGCCATTTTTGCATCATGCTTTGCGTACATTTCGGACGTATCCACGGTGGAGCAGCG 103330 Query 50254 CACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGC 50313 |||| | || ||| ||| ||||| | || || ||||| | ||||| || || ||||| Sbjct 103329 CACGATCCGCGTGACCATTTTGGACGTGGTGTATCTGAGTGCCATGCCCACAGGCGTGGC 103270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041275630600