Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq111 248 1e-60
seq178 197 2e-45
seq162 183 4e-41
seq358 100 4e-16
>seq111
Length=362587
Score = 248 bits (274), Expect = 1e-60
Identities = 570/849 (67%), Gaps = 32/849 (4%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| | |||||||| ||||| || |||||||| ||||| || |||||| | || |
Sbjct 245194 AGGCCGAAGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCGAAGGACGCGACAGACT 245135
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157
||| | ||| |||| || | ||||| | || || || ||| | |||||||||| |
Sbjct 245134 GGG---CCCGTCTGACCGACAACGAGCGCTACTTCATCTCCCACGTGCTGGCCTTCTTCG 245078
Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217
| | ||||||||| || || ||||| |||||| | || ||| ||| ||| || |
Sbjct 245077 CTGCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTCAGGAGGTGCAGA 245018
Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277
| | |||| | ||||| ||||| ||||| || || |||||||||||||| || |
Sbjct 245017 TCACGGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCCATGGAGAACGTGCACTCCGAGA 244958
Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCAACGTAAACACATGCTCT 125334
||||| || ||||||| ||||| || || || | | || | || || |
Sbjct 244957 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGAAGGAGCGCGACTACTTG---T 244901
Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGG 125390
| || || | || || ||||| || ||||| ||||| | |||| |
Sbjct 244900 TCAATGCTGTTGAGACCATGCCGGCT----GTAAAGCGCAAGGCAGACTGGGCCCTGTCC 244845
Query 125391 TGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTA 125447
||||| || | || || | || ||||| | | | || || || |||||
Sbjct 244844 TGGAT--AT-CCTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCAGCCGTG 244788
Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507
|| || |||||||| || || ||||| | ||||||||||| |||||||| || |||
Sbjct 244787 GAAGGAATCTTCTTCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTC 244728
Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567
|||||||| ||||| | |||||| | || ||||| ||||| || || ||||| |||
Sbjct 244727 ATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACTGCGAC 244668
Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG 125627
||||| | || ||| | | ||||| || | | || | | |||| ||
Sbjct 244667 TTTGCGGTGCTCATGT---ACCAGCATCTG-GTGCAGCGTCC----CAAGCG-GGAGCGC 244617
Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687
| || | || | | ||||| || || || |||||||| || |||||| ||||
Sbjct 244616 ATTATTGAGATCATTAGGGATGCTGTCGAAATCGAGCAAGAGTTCCTCACCGAAGCCCTG 244557
Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747
|| || ||||||||||||||||| || |||| | ||||||| || ||||| ||
Sbjct 244556 CCCTGCAATTTGATTGGCATGAACTGCGTCCTCATGTCCCAGTACATTGAATTTGTCGCC 244497
Query 125748 GATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGAT 125807
|||||||| ||| ||| | || | ||||| |||||| | ||||||||||| |
Sbjct 244496 GATCGTCTGCTGATGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATCCCTTCAGT 244437
Query 125808 TTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAG 125867
|||||| | || || || || || ||||| ||||| || ||||| ||||| ||||
Sbjct 244436 TTCATGGATATGATCTCTCTGGACGGAAAGACAAACTTCTTTGAGAAAAAGGTTGCCGAG 244377
Query 125868 TACAAACGC 125876
||| | |||
Sbjct 244376 TACCAGCGC 244368
>seq178
Length=225394
Score = 197 bits (218), Expect = 2e-45
Identities = 391/576 (68%), Gaps = 22/576 (4%)
Strand=Plus/Plus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
|||||| | |||||||| ||||| || || || | || ||||||||||| || ||||||
Sbjct 188396 TTGCGGAAGAAGATGACGCCGGCGCGTGGGCCGCGCAGCGTCTTGTGCGTGGTTGTGGTC 188455
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCG----CAATCAAGCCCGC 127217
|||||||| ||| | || || || || |||||| | | || || ||
Sbjct 188456 ACAATGTCGGCGTACACGAACGGCGATGGTATA----TGCCCGGCGGCCACCAGACCGGC 188511
Query 127218 AATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCG 127277
| || || ||||||||||| || ||| ||| | | ||| |||| ||||| ||
Sbjct 188512 CACATGGGCCATATCGGCCATTAGATAGGCGCCCACATCGTCGCAGATCTGACGGAAACG 188571
Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337
||||| | | || | ||||| | |||| || ||||| | | || |||||
Sbjct 188572 GGCGTAGTCGAGCAGGCGGGAGTAGCACGAGATGCCAGCGATGATAATCTGTGGCTTGAA 188631
Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397
||||| |||||| || ||| ||||||||| || || ||| || | ||||||
Sbjct 188632 GGCCTTGGCCGCCTCGGCCAGCTTGTCATAGTCGATGATGCCCGTCGCGGGGTTCACCTT 188691
Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGT----------TGCGGAA 127445
|||||||||||| ||||| |||| || || || || | ||| || |||
Sbjct 188692 GTACGGCATGCTCTCGAAGAAGATCGAGGTGGCCGAGATGCGTTTGGTGGCCGTGAAGAA 188751
Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT 127505
|||||||| || ||||| || |||||||| || || |||||||| | | |||||||
Sbjct 188752 GCCGTGCGTTAGATGGCCGCCATCGGGCAGGTCCAGGCCCATGATGCGATCGTGCGGACG 188811
Query 127506 AACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565
| || || || |||| | ||||| ||||||||| ||||| || ||| |||
Sbjct 188812 ACAGACGCCCACATAGGCGGCGAGATTGGCGGGCGAGCCCGAATACGGCTGAACATTCAC 188871
Query 127566 TCCCCATTCGGACTCGTTCAAATTGAA-CGCTCTGAGACATCGCTGCTGTGCTAGCAGTT 127624
||||| | ||| || |||||| |||| | | |||| ||| || |||||||
Sbjct 188872 GCCCCACTGATCGTCGGCCAGATTGAAGAGCTC-ACGGCCGCGCTTCTGGGCCAGCAGTT 188930
Query 127625 CGATGCGATCGATAAACTCGTTACCACCATAGTATC 127660
|||||| || || |||||||| || ||||||||||
Sbjct 188931 CGATGCAGTCAATGAACTCGTTGCCGCCATAGTATC 188966
>seq162
Length=246154
Score = 183 bits (202), Expect = 4e-41
Identities = 484/723 (67%), Gaps = 26/723 (4%)
Strand=Plus/Plus
Query 69896 CCTCTGTTGACGACCAAGACTGTCTT-TGTCAAGGGCG-TCATCGAGGAGCTCTTGTGGA 69953
|| ||| |||| |||||| || || | || ||||| || | |||||||| | |||
Sbjct 67602 CCCCTGCTGACCACCAAGCGGGTGTTCTTTC--GGGCGGTCGTGGAGGAGCTGCTATGGT 67659
Query 69954 TGATTTCCGGATCGACCAATGCCAAAGAGCTG-AGCCGAAAGGGTGTACACATTTGGAGC 70012
| | ||||| ||| |||| || || || |||| | || |||||||||
Sbjct 67660 TTGTGGCCGGAAAGACAGATGCGAAGCTCTTGCAGGCGAA-GAACGTGCACATTTGGGAT 67718
Query 70013 GGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGA 70071
|||||||| | || | |||| | || ||| ||| ||| ||| | | ||| ||
Sbjct 67719 GGCAACAGCACCAGA-GAGTTTCTAGACAAGCTGGGCCACACGGACCGCGCCGTGGGAGA 67777
Query 70072 TCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGA 70131
|||||| || || || || || |||||| | |||| || || |||||| ||||||
Sbjct 67778 TCTGGGTCCTGTCTATGGCTTTCAGTGGCGACACTTTGGTGCCGAGTATGGCACCTGCGA 67837
Query 70132 GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTCTCAAGA 70190
||||| || |||| | || || |||| | || | ||| || ||| |
Sbjct 67838 CGATGACTACAGCGGCAAGGGAATCGACCAGTTGC-GCCAGGTAATTAGGACCATCAGGG 67896
Query 70191 CCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC--TGCAGATTTGCACCA 70248
|||||| | ||| | | ||| | |||| | | |||||||| || | || ||||
Sbjct 67897 ATAATCCATCCGATCGTCGCATCATTATGTCCGCCTGGAATCCCCTGGACAT----ACCA 67952
Query 70249 AA--TGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC-----TCGTAC--GATGG 70299
|| ||||| |||| || || ||||| | || || || ||| || || || ||
Sbjct 67953 AAAATGGCATTACCCCCCTGCCACTGCCTTGCACAATTCTACGTCTCTCAAACTCGA-GG 68011
Query 70300 CAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAA 70359
| | || ||| |||||||| |||| |||||||||||||| || || ||||| ||
Sbjct 68012 AGAGCTCTCCTGCCAGCTGTATCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCAA 68071
Query 70360 CATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCA 70419
||| || |||| | || | || ||||||||||| || | || ||| |||| ||
Sbjct 68072 CATCGCCTCCTATGCCCTGCTCACCCACATGATTGCACATGTAACGGGCTTGAAGACGGG 68131
Query 70420 CGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAA 70479
||| || || |||||||| |||||| |||| |||||| | || || | || ||| ||||
Sbjct 68132 CGATTTTGTCCACACCATGGGCGACACTCATGTGTATCTTAACCATGTTGATCCACTAAA 68191
Query 70480 GGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGA 70539
|| ||| || ||||| |||| |||| ||||| |||||| | | || || || ||
Sbjct 68192 GGAGCAGCTAGAACGCAAGCCACGACCGTTTCCAAAGCTGAAAATCAAGCGAAAGGTCGA 68251
Query 70540 AAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAA 70599
|| ||||| ||| |||||||| ||| | | || |||||||| ||||||||
Sbjct 68252 GAACATTGAAGAATTTCGATACGAAGACTTTGAGGTCATCGGCTACGATCCTTACCCTAA 68311
Query 70600 GAT 70602
|||
Sbjct 68312 GAT 68314
>seq358
Length=123483
Score = 100 bits (110), Expect = 4e-16
Identities = 130/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 50134 CTGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGA 50193
|||||| || || | || ||||||||||| || | || || || || || |||||
Sbjct 103449 CTGGCCGGTGCAGAACATCATCTACACGGCCACCCTGCCCTCGGCTCTGACGGGTGCCGA 103390
Query 50194 TTTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCG 50253
| || |||| || ||| | |||||||| |||||| | || || || || |||||| | ||
Sbjct 103389 TGTGGCCATTTTTGCATCATGCTTTGCGTACATTTCGGACGTATCCACGGTGGAGCAGCG 103330
Query 50254 CACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGC 50313
|||| | || ||| ||| ||||| | || || ||||| | ||||| || || |||||
Sbjct 103329 CACGATCCGCGTGACCATTTTGGACGTGGTGTATCTGAGTGCCATGCCCACAGGCGTGGC 103270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741041275630600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |