Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq51 93.3 4e-14
seq6 87.8 1e-12
>seq51
Length=625475
Score = 93.3 bits (102), Expect = 4e-14
Identities = 217/324 (67%), Gaps = 5/324 (2%)
Strand=Plus/Minus
Query 20956 CCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGTCTGTTAAG 21015
|||||||| | ||| |||| | ||||| || |||||| ||| |||| | |
Sbjct 71573 CCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTCAGCTCGTGGCCACCCTTG 71514
Query 21016 CCGAGGTCATCGCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGCGGACCA 21075
|| | |||||| ||| | ||| || |||| | | || || | |||||| | |||
Sbjct 71513 CCCAAGTCATCAGCATCGGCGTGGACGACCACGGTGCGTCCAATGATGCTGTCGGCACCG 71454
Query 21076 AACAAGCTCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGCCCGCGGAG 21135
|| | | ||| |||| | ||| ||||| ||| | | || ||| || |
Sbjct 71453 AAAAGAGTGATCTTTGAGTCGGTGATGCTGACAGCCGTGGG---GCTGTCGCCGGCCGCC 71397
Query 21136 CGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATT-TTG 21194
| | |||||||| ||||| | ||| || | || || ||| || ||||| | |||
Sbjct 71396 TGAATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGGGCACCGTGCTCCTTG 71337
Query 21195 GTGCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTC 21254
|||| || || ||||| ||||| ||| ||||||||||| || |||||||||||||
Sbjct 71336 CTGCGG-GGATTGAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTCGCCGAACTC 71278
Query 21255 GTGAACGTGAAAGCCGTGCAGTCC 21278
||| || || || || ||||||||
Sbjct 71277 GTGCACATGGAATCCATGCAGTCC 71254
>seq6
Length=3104374
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||||| || |||||||| || || ||||| || | || || | | |||||
Sbjct 2898463 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 2898404
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|||||| || || || | || || | ||||||||| ||| | |||||| |||||
Sbjct 2898403 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 2898344
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || || || | ||| || || ||||| || | ||| ||||| ||
Sbjct 2898343 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 2898284
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044
|| || | |||||| |||||||||||||||||
Sbjct 2898283 GCCAGTGAGAGTTTTCACAAAAATTTGCATTTT 2898251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414563023207390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |