Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq51 93.3 4e-14 seq6 87.8 1e-12 >seq51 Length=625475 Score = 93.3 bits (102), Expect = 4e-14 Identities = 217/324 (67%), Gaps = 5/324 (2%) Strand=Plus/Minus Query 20956 CCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGTCTGTTAAG 21015 |||||||| | ||| |||| | ||||| || |||||| ||| |||| | | Sbjct 71573 CCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTCAGCTCGTGGCCACCCTTG 71514 Query 21016 CCGAGGTCATCGCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGCGGACCA 21075 || | |||||| ||| | ||| || |||| | | || || | |||||| | ||| Sbjct 71513 CCCAAGTCATCAGCATCGGCGTGGACGACCACGGTGCGTCCAATGATGCTGTCGGCACCG 71454 Query 21076 AACAAGCTCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGCCCGCGGAG 21135 || | | ||| |||| | ||| ||||| ||| | | || ||| || | Sbjct 71453 AAAAGAGTGATCTTTGAGTCGGTGATGCTGACAGCCGTGGG---GCTGTCGCCGGCCGCC 71397 Query 21136 CGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATT-TTG 21194 | | |||||||| ||||| | ||| || | || || ||| || ||||| | ||| Sbjct 71396 TGAATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGGGCACCGTGCTCCTTG 71337 Query 21195 GTGCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTC 21254 |||| || || ||||| ||||| ||| ||||||||||| || ||||||||||||| Sbjct 71336 CTGCGG-GGATTGAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTCGCCGAACTC 71278 Query 21255 GTGAACGTGAAAGCCGTGCAGTCC 21278 ||| || || || || |||||||| Sbjct 71277 GTGCACATGGAATCCATGCAGTCC 71254 >seq6 Length=3104374 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||| || || ||||| || | || || | | ||||| Sbjct 2898463 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 2898404 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | ||||||||| ||| | |||||| ||||| Sbjct 2898403 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 2898344 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | ||| || || ||||| || | ||| ||||| || Sbjct 2898343 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 2898284 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || | |||||| ||||||||||||||||| Sbjct 2898283 GCCAGTGAGAGTTTTCACAAAAATTTGCATTTT 2898251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414563023207390