Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq234 91.5 9e-14
seq35 89.7 3e-13
>seq234
Length=227530
Score = 91.5 bits (100), Expect = 9e-14
Identities = 155/224 (69%), Gaps = 8/224 (4%)
Strand=Plus/Plus
Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213
||||| ||||||||||| || ||||| || || || || ||||||| || | |||
Sbjct 9920 CCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAG----ATAGTGTTC 9975
Query 33214 G----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTT 33269
| || |||||||| || ||| || || || ||||| || || | || || ||||
Sbjct 9976 GGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTT 10035
Query 33270 CTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAG 33329
|||| || |||| ||| || ||| || || || |||| || || ||||
Sbjct 10036 CTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAG 10095
Query 33330 TTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373
|||| || || |||||||| || ||||| || || |||||| ||
Sbjct 10096 TTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCATGGTT 10139
>seq35
Length=832945
Score = 89.7 bits (98), Expect = 3e-13
Identities = 152/219 (69%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||| ||||||||||| |||||||| || || || ||||| || |||||| | || |
Sbjct 773435 CGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG 773494
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||| ||||| || ||| || ||||| ||||| || | ||| ||||| || ||
Sbjct 773495 TCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTG 773554
Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| || || | | || ||||| ||| | || |||| ||
Sbjct 773555 TCCTGGATCTTAGCC---TTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTG 773611
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || || || || || || || ||||| || ||||||
Sbjct 773612 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 773650
Score = 89.7 bits (98), Expect = 3e-13
Identities = 150/216 (69%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
|||||||||||| |||||||| || || || ||||| || |||||| | || ||| ||
Sbjct 774124 CACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTC 774183
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC--- 33276
|| ||||| || || || ||||| ||||| || | ||| ||||| || || ||
Sbjct 774184 CAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 774243
Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336
| | | ||| || || | | || ||||| ||| | || || || ||||| ||
Sbjct 774244 GATCTTAGCC---TTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGT 774300
Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|| || || || || || ||||| || ||||||||
Sbjct 774301 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 774336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318770082327630
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |