Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq234 91.5 9e-14 seq35 89.7 3e-13 >seq234 Length=227530 Score = 91.5 bits (100), Expect = 9e-14 Identities = 155/224 (69%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213 ||||| ||||||||||| || ||||| || || || || ||||||| || | ||| Sbjct 9920 CCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAG----ATAGTGTTC 9975 Query 33214 G----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTT 33269 | || |||||||| || ||| || || || ||||| || || | || || |||| Sbjct 9976 GGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTT 10035 Query 33270 CTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAG 33329 |||| || |||| ||| || ||| || || || |||| || || |||| Sbjct 10036 CTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAG 10095 Query 33330 TTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 |||| || || |||||||| || ||||| || || |||||| || Sbjct 10096 TTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCATGGTT 10139 >seq35 Length=832945 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||||||||| |||||||| || || || ||||| || |||||| | || | Sbjct 773435 CGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG 773494 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| || ||| || ||||| ||||| || | ||| ||||| || || Sbjct 773495 TCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTG 773554 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | || ||||| ||| | || |||| || Sbjct 773555 TCCTGGATCTTAGCC---TTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTG 773611 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || || || ||||| || |||||| Sbjct 773612 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 773650 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||||||||| |||||||| || || || ||||| || |||||| | || ||| || Sbjct 774124 CACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTC 774183 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC--- 33276 || ||||| || || || ||||| ||||| || | ||| ||||| || || || Sbjct 774184 CAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 774243 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | | ||| || || | | || ||||| ||| | || || || ||||| || Sbjct 774244 GATCTTAGCC---TTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGT 774300 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || || || ||||| || |||||||| Sbjct 774301 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 774336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318770082327630