Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_005135.1
Length=173591
Score E
Sequences producing significant alignments: (Bits) Value
seq8 150 2e-31
seq15 131 2e-25
>seq8
Length=1553183
Score = 150 bits (166), Expect = 2e-31
Identities = 185/252 (73%), Gaps = 3/252 (1%)
Strand=Plus/Plus
Query 6475 GCGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCC 6534
||| || ||||||||||| ||| ||||| | ||||| ||||| | ||||| || ||
Sbjct 15101 GCGCAGGGCTTCACCAAACGCAACCGCTTTACCAGCGATTACATGCATCAGCGGACCACC 15160
Query 6535 TTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAG 6594
|||| ||| ||||| | |||||||| | |||||||| | | |||| || || ||
Sbjct 15161 CTGAAGACCGGGGAACACCGCAGAATTGATCTTCTTGGCCAGTGCTTCATCATTGGTCAG 15220
Query 6595 AATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGC 6654
||||| ||||||||| ||||| |||| || ||||| || || | || |||||||| ||
Sbjct 15221 AATGACGCCACCACGTGGGCCACGCAGTGTCTTATGCGTGGTGGATGTCACAACGTCAGC 15280
Query 6655 ACCCCATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCAT 6714
| ||| | || || | || |||| ||| ||||| | || |||||||| |||||
Sbjct 15281 A---TATTCAACCGGGTTGGGGTACAGACCAGCCGCAACCAGACCGGCAAAATGCGCCAT 15337
Query 6715 ATCGACCATCAA 6726
||| ||||||||
Sbjct 15338 ATCAACCATCAA 15349
>seq15
Length=1383265
Score = 131 bits (144), Expect = 2e-25
Identities = 180/251 (72%), Gaps = 3/251 (1%)
Strand=Plus/Plus
Query 6475 GCGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCC 6534
||| || ||||||||||| ||| || || | ||||| ||||| | ||||| || ||
Sbjct 729620 GCGCAGGGCTTCACCAAACGCAACCGCCTTACCAGCGATTACATGCATCAGCGGACCACC 729679
Query 6535 TTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAG 6594
|||| ||| ||||| | |||||||| | |||||||| | | | || || || ||
Sbjct 729680 CTGAAGACCGGGGAACACCGCAGAATTGATCTTCTTGGCCAGTGCTTCGTCATTGGTCAG 729739
Query 6595 AATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGC 6654
||| | ||||||||| ||||| |||| || ||||| || || | || || ||||| ||
Sbjct 729740 AATAACGCCACCACGTGGGCCACGCAGTGTCTTATGCGTGGTGGATGTCACTACGTCAGC 729799
Query 6655 ACCCCATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCAT 6714
| ||| | || || | || |||| ||| ||||| | || |||||||| |||||
Sbjct 729800 A---TATTCAACCGGGTTGGGGTACAGACCAGCCGCAACCAGACCGGCAAAATGCGCCAT 729856
Query 6715 ATCGACCATCA 6725
||| |||||||
Sbjct 729857 ATCAACCATCA 729867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555349767152600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |