Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq8 150 2e-31 seq15 131 2e-25 >seq8 Length=1553183 Score = 150 bits (166), Expect = 2e-31 Identities = 185/252 (73%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 6475 GCGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCC 6534 ||| || ||||||||||| ||| ||||| | ||||| ||||| | ||||| || || Sbjct 15101 GCGCAGGGCTTCACCAAACGCAACCGCTTTACCAGCGATTACATGCATCAGCGGACCACC 15160 Query 6535 TTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAG 6594 |||| ||| ||||| | |||||||| | |||||||| | | |||| || || || Sbjct 15161 CTGAAGACCGGGGAACACCGCAGAATTGATCTTCTTGGCCAGTGCTTCATCATTGGTCAG 15220 Query 6595 AATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGC 6654 ||||| ||||||||| ||||| |||| || ||||| || || | || |||||||| || Sbjct 15221 AATGACGCCACCACGTGGGCCACGCAGTGTCTTATGCGTGGTGGATGTCACAACGTCAGC 15280 Query 6655 ACCCCATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCAT 6714 | ||| | || || | || |||| ||| ||||| | || |||||||| ||||| Sbjct 15281 A---TATTCAACCGGGTTGGGGTACAGACCAGCCGCAACCAGACCGGCAAAATGCGCCAT 15337 Query 6715 ATCGACCATCAA 6726 ||| |||||||| Sbjct 15338 ATCAACCATCAA 15349 >seq15 Length=1383265 Score = 131 bits (144), Expect = 2e-25 Identities = 180/251 (72%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 6475 GCGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCC 6534 ||| || ||||||||||| ||| || || | ||||| ||||| | ||||| || || Sbjct 729620 GCGCAGGGCTTCACCAAACGCAACCGCCTTACCAGCGATTACATGCATCAGCGGACCACC 729679 Query 6535 TTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAG 6594 |||| ||| ||||| | |||||||| | |||||||| | | | || || || || Sbjct 729680 CTGAAGACCGGGGAACACCGCAGAATTGATCTTCTTGGCCAGTGCTTCGTCATTGGTCAG 729739 Query 6595 AATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGC 6654 ||| | ||||||||| ||||| |||| || ||||| || || | || || ||||| || Sbjct 729740 AATAACGCCACCACGTGGGCCACGCAGTGTCTTATGCGTGGTGGATGTCACTACGTCAGC 729799 Query 6655 ACCCCATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCAT 6714 | ||| | || || | || |||| ||| ||||| | || |||||||| ||||| Sbjct 729800 A---TATTCAACCGGGTTGGGGTACAGACCAGCCGCAACCAGACCGGCAAAATGCGCCAT 729856 Query 6715 ATCGACCATCA 6725 ||| ||||||| Sbjct 729857 ATCAACCATCA 729867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555349767152600