Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq22 86.0 9e-12 seq8 86.0 9e-12 seq15 84.2 3e-11 >seq22 Length=1073832 Score = 86.0 bits (94), Expect = 9e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 108011 TGGAGCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCA 108070 ||| ||||||| || | |||||| || ||||||| ||||||||||| |||||||||||| Sbjct 996516 TGGTGCCCCCATTCAGATTTGAACTGAAGACCTACCGCTTACAAGGCGGTTGCTCTACCA 996575 Query 108071 CTGAGCTATA 108080 |||||||||| Sbjct 996576 CTGAGCTATA 996585 >seq8 Length=1553183 Score = 86.0 bits (94), Expect = 9e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 108011 TGGAGCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCA 108070 ||| ||||||| || | |||||| || ||||||| ||||||||||| |||||||||||| Sbjct 956215 TGGTGCCCCCATTCAGATTTGAACTGAAGACCTACCGCTTACAAGGCGGTTGCTCTACCA 956156 Query 108071 CTGAGCTATA 108080 |||||||||| Sbjct 956155 CTGAGCTATA 956146 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 108310 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 108369 ||||| || ||||||| || |||| ||||||||||||||| ||||||||| || |||||| Sbjct 408617 CCGTACGGGATTCGAACCCGTGTTGCCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 408558 Query 108370 GAACGG 108375 |||||| Sbjct 408557 GAACGG 408552 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 108310 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 108369 ||||| || ||||||| || |||| ||||||||||||||| ||||||||| || |||||| Sbjct 562067 CCGTACGGGATTCGAACCCGTGTTGCCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 562126 Query 108370 GAACGG 108375 |||||| Sbjct 562127 GAACGG 562132 >seq15 Length=1383265 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 108310 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 108369 ||||| || ||||||| || |||| ||||||||||||||| ||||||||| || |||||| Sbjct 1070650 CCGTACGGGATTCGAACCCGTGTTGCCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 1070591 Query 108370 GAACGG 108375 |||||| Sbjct 1070590 GAACGG 1070585 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 108310 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 108369 ||||| || ||||||| || |||| ||||||||||||||| ||||||||| || |||||| Sbjct 1183205 CCGTACGGGATTCGAACCCGTGTTGCCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 1183264 Query 108370 GAACGG 108375 |||||| Sbjct 1183265 GAACGG 1183270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746202750784400