Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq234 187 6e-42
seq23 113 1e-19
seq111 87.8 4e-12
>seq234
Length=227530
Score = 187 bits (206), Expect = 6e-42
Identities = 172/218 (79%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|||| ||||| | ||| || || || || |||||||| ||||| |||||||| ||||
Sbjct 9918 AGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGATAGTGTTCGG 9977
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| | |||||| ||||| || || | | |||||||| ||||| |||||||||
Sbjct 9978 CCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCT 10037
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|| ||||||||||| ||||| |||||||| | |||||| ||||| ||||| || ||
Sbjct 10038 TTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTT 10097
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || ||||| || |||||||| ||||||||
Sbjct 10098 ATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCAT 10135
>seq23
Length=1278451
Score = 113 bits (124), Expect = 1e-19
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || |||||||| ||||| | || || || || || || ||
Sbjct 1264121 GTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCCAGCTGCTTGCCG 1264180
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || || || ||||| || || ||||| ||||| || ||
Sbjct 1264181 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 1264240
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| ||| || || ||||| | || || || || ||||| | |||
Sbjct 1264241 ACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAAGGTT 1264300
Query 104543 TTTACAAATATCTGCATTTTGT 104564
|| ||||| |||||||||||||
Sbjct 1264301 TTCACAAAGATCTGCATTTTGT 1264322
>seq111
Length=362587
Score = 87.8 bits (96), Expect = 4e-12
Identities = 274/413 (66%), Gaps = 15/413 (4%)
Strand=Plus/Minus
Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936
||||| || |||||||| ||||| || ||| ||| |||| ||||| ||||| | ||
Sbjct 245069 GATGGCATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAG 245010
Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996
|| | || || ||||| |||||||| || || || || | || || |||||||||||
Sbjct 245009 GCGCGTTGCTTCTACGGCTTCCAGATTGCCATGGAGAACGTGCACTCCGAGATGTACAGC 244950
Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC--TTCTA 269054
| | || || || || ||| || || || | | ||| | ||| | ||
Sbjct 244949 GTGCTCATTGACACCTACATACGGGAGCCGAAGGAGC-GCGACTACT-TGTTCAATGCTG 244892
Query 269055 T-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC--G 269111
| |||| | ||| ||| | || | || ||||| ||| |||||| | |
Sbjct 244891 TTGAGACC-ATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATATCCTCG 244833
Query 269112 ATAGCGCGCC----TTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167
| | || ||| || | ||| ||| |||| ||||| || || ||||| || |||
Sbjct 244832 AAATCG-GCCAACTTTGCCGAGCGTA-TTA-TTGCCTTTGCAGCCGTGGAAGGAATCTTC 244776
Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227
|| || |||||| | ||||||||| ||||||| | ||||| ||||| || |
Sbjct 244775 TTCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTG 244716
Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280
|| ||||| ||||| |||| | ||||||||| | ||||||||||| ||
Sbjct 244715 ACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACTGCGACTTTGC 244663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151369854314980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |