Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq234 187 6e-42 seq23 113 1e-19 seq111 87.8 4e-12 >seq234 Length=227530 Score = 187 bits (206), Expect = 6e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| ||||| | ||| || || || || |||||||| ||||| |||||||| |||| Sbjct 9918 AGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGATAGTGTTCGG 9977 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | |||||| ||||| || || | | |||||||| ||||| ||||||||| Sbjct 9978 CCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCT 10037 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||||||||| ||||| |||||||| | |||||| ||||| ||||| || || Sbjct 10038 TTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTT 10097 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || |||||||| |||||||| Sbjct 10098 ATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCAT 10135 >seq23 Length=1278451 Score = 113 bits (124), Expect = 1e-19 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| ||||| | || || || || || || || Sbjct 1264121 GTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCCAGCTGCTTGCCG 1264180 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || ||||| || || ||||| ||||| || || Sbjct 1264181 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 1264240 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| || || ||||| | || || || || ||||| | ||| Sbjct 1264241 ACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAAGGTT 1264300 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || ||||| ||||||||||||| Sbjct 1264301 TTCACAAAGATCTGCATTTTGT 1264322 >seq111 Length=362587 Score = 87.8 bits (96), Expect = 4e-12 Identities = 274/413 (66%), Gaps = 15/413 (4%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||| || |||||||| ||||| || ||| ||| |||| ||||| ||||| | || Sbjct 245069 GATGGCATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAG 245010 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | || || ||||| |||||||| || || || || | || || ||||||||||| Sbjct 245009 GCGCGTTGCTTCTACGGCTTCCAGATTGCCATGGAGAACGTGCACTCCGAGATGTACAGC 244950 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC--TTCTA 269054 | | || || || || ||| || || || | | ||| | ||| | || Sbjct 244949 GTGCTCATTGACACCTACATACGGGAGCCGAAGGAGC-GCGACTACT-TGTTCAATGCTG 244892 Query 269055 T-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC--G 269111 | |||| | ||| ||| | || | || ||||| ||| |||||| | | Sbjct 244891 TTGAGACC-ATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATATCCTCG 244833 Query 269112 ATAGCGCGCC----TTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167 | | || ||| || | ||| ||| |||| ||||| || || ||||| || ||| Sbjct 244832 AAATCG-GCCAACTTTGCCGAGCGTA-TTA-TTGCCTTTGCAGCCGTGGAAGGAATCTTC 244776 Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227 || || |||||| | ||||||||| ||||||| | ||||| ||||| || | Sbjct 244775 TTCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTG 244716 Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 || ||||| ||||| |||| | ||||||||| | ||||||||||| || Sbjct 244715 ACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACTGCGACTTTGC 244663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151369854314980