Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq33 114 1e-20
>seq33
Length=838361
Score = 114 bits (126), Expect = 1e-20
Identities = 179/254 (70%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299
|| || || ||||| || | | ||||| || ||||| |||| || ||| |
Sbjct 265211 CCTGTCGAGCCGAAACCGGCCACCCCGCGTTCAGTGTCATCCAGCTTGTCGACCAGCTCC 265270
Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359
| | |||||| | ||||| ||||| || | |||||| || | ||||| | ||| |||
Sbjct 265271 AGTTCTGGGTAGAAGATGCGCTCGCAAATAAACTGAGCAATGCGATCTCCATGCTTCACC 265330
Query 5360 TCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417
|| ||||| ||||| || ||| || || || || || | |||||| ||||||||||
Sbjct 265331 TCGAAGTCC--GTTTCAGAGTGGTTGAATAGAACGACGCCCAGATTGCCGCGGTAGTCTT 265388
Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477
| || | |||||| |||||||| || ||||||| || || || ||||| || || || |
Sbjct 265389 CATCCACAACGCCGGCGCCCACATCAATAAAGTTCTTCACGGCCAGGCCAGAGCGCGGAG 265448
Query 5478 CTATGCGTCCGTAG 5491
| | ||| || |||
Sbjct 265449 CGACGCGACCATAG 265462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447739570037200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |