Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq33 114 1e-20 >seq33 Length=838361 Score = 114 bits (126), Expect = 1e-20 Identities = 179/254 (70%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 || || || ||||| || | | ||||| || ||||| |||| || ||| | Sbjct 265211 CCTGTCGAGCCGAAACCGGCCACCCCGCGTTCAGTGTCATCCAGCTTGTCGACCAGCTCC 265270 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | | |||||| | ||||| ||||| || | |||||| || | ||||| | ||| ||| Sbjct 265271 AGTTCTGGGTAGAAGATGCGCTCGCAAATAAACTGAGCAATGCGATCTCCATGCTTCACC 265330 Query 5360 TCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 || ||||| ||||| || ||| || || || || || | |||||| |||||||||| Sbjct 265331 TCGAAGTCC--GTTTCAGAGTGGTTGAATAGAACGACGCCCAGATTGCCGCGGTAGTCTT 265388 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 | || | |||||| |||||||| || ||||||| || || || ||||| || || || | Sbjct 265389 CATCCACAACGCCGGCGCCCACATCAATAAAGTTCTTCACGGCCAGGCCAGAGCGCGGAG 265448 Query 5478 CTATGCGTCCGTAG 5491 | | ||| || ||| Sbjct 265449 CGACGCGACCATAG 265462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447739570037200