Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq162 104 2e-17 >seq162 Length=246154 Score = 104 bits (114), Expect = 2e-17 Identities = 180/258 (70%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 25346 AAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 25405 ||| || || | | |||| ||| | | || || |||| | ||||| |||| |||| Sbjct 68267 AAATTCTTCAATGTTCTCGACCTTTCGCTTGATTTTCAGCTTTGGAAACGGTCGTGGCTT 68208 Query 25406 CCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 25465 | || ||||| ||| || || || || || | || || || |||| ||| |||| Sbjct 68207 GCGTTCTAGCTGCTCCTTTAGTGGATCAACATGGTTAAGATACACATGAGTGTCGCCCAT 68148 Query 25466 AGTGTGGACAAACTCTCCCG-GTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGA 25524 ||||||||||| || |||| ||| ||||| || || | || ||||||| ||||| | Sbjct 68147 GGTGTGGACAAAATCGCCCGTCTTCAAGCCC-GTTACATGTGCAATCATGTGGGTGAGCA 68089 Query 25525 GAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAG 25584 | ||| ||||||||| ||||| || || | |||||||| | | || ||| || Sbjct 68088 GGGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGC-TCCGCTGATAC 68030 Query 25585 AGCTGACACGAGAGCTCT 25602 ||||| || ||||||||| Sbjct 68029 AGCTGGCAGGAGAGCTCT 68012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340129578598755