Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq84 118 6e-22
seq590 116 2e-21
seq209 116 2e-21
seq160 116 2e-21
seq311 113 2e-20
seq11 102 4e-17
>seq84
Length=440599
Score = 118 bits (130), Expect = 6e-22
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 277769 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 277710
Query 11515 CTGAGCTAATGGGCCGT 11531
|||||||||||||||||
Sbjct 277709 CTGAGCTAATGGGCCGT 277693
>seq590
Length=37775
Score = 116 bits (128), Expect = 2e-21
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 11432 TATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489
|||| || ||||||||| | || ||||||||| |||||||||| ||||||||||
Sbjct 18980 TATACAAAAAATAAAAAAGTATTTTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGC 18921
Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||| ||||||||||||||||||||
Sbjct 18920 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 18881
Score = 116 bits (128), Expect = 2e-21
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 24510 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 24451
Query 11515 CTGAGCTAATGGGCCG 11530
||||||||||||||||
Sbjct 24450 CTGAGCTAATGGGCCG 24435
Score = 113 bits (124), Expect = 2e-20
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| ||| ||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 18318 AAAAAATAAAACTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 18377
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||||||||
Sbjct 18378 GCTCTAACCAGCTGAGCTAATGGGCC 18403
>seq209
Length=212543
Score = 116 bits (128), Expect = 2e-21
Identities = 80/90 (89%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 11442 ATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
|||||||| ||| | ||||||||| |||||||||| ||||||||||||||||||||
Sbjct 54164 ATAAAAAAAGAAAGTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 54105
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||| ||||||||||||||||||||
Sbjct 54104 CGACGCTCTAACCAACTGAGCTAATGGGCC 54075
Score = 105 bits (116), Expect = 3e-18
Identities = 85/102 (83%), Gaps = 1/102 (1%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487
|||||| || || | | |||||| | ||||||||| |||||||||| || |||||
Sbjct 51200 AAATATTGACAAAAAAGAGAATCAACTCTGGCCCATGGGGGGATCGAACCCGCGGCCTTC 51141
Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||||| |||| |||||||||||||||
Sbjct 51140 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 51099
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| |||||||||| || |||||||||||||||||||||||||| |||| |
Sbjct 51581 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 51640
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 51641 TGAGCTAATGGGCC 51654
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| |||||||||| || |||||||||||||||||||||||||| |||| |
Sbjct 53934 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 53875
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 53874 TGAGCTAATGGGCC 53861
>seq160
Length=244892
Score = 116 bits (128), Expect = 2e-21
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 9938 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 9997
Query 11515 CTGAGCTAATGGGCCG 11530
||||||||||||||||
Sbjct 9998 CTGAGCTAATGGGCCG 10013
Score = 116 bits (128), Expect = 2e-21
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 11432 TATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489
|||| || ||||||||| | || ||||||||| |||||||||| ||||||||||
Sbjct 15466 TATACAAAAAATAAAAAAGTATTTTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGC 15525
Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||| ||||||||||||||||||||
Sbjct 15526 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 15565
Score = 109 bits (120), Expect = 3e-19
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| |||| ||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 16128 AAAAATTAAATCTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 16069
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||||||||
Sbjct 16068 GCTCTAACCAGCTGAGCTAATGGGCC 16043
>seq311
Length=160881
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 89209 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 89150
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 89149 TGAGCTAATGGGCC 89136
>seq11
Length=2857411
Score = 102 bits (112), Expect = 4e-17
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| |||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 1246995 TTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAG 1246936
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 1246935 CTGAGCTAATGGGCC 1246921
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261485033302060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |