Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq84 118 6e-22 seq590 116 2e-21 seq209 116 2e-21 seq160 116 2e-21 seq311 113 2e-20 seq11 102 4e-17 >seq84 Length=440599 Score = 118 bits (130), Expect = 6e-22 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 277769 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 277710 Query 11515 CTGAGCTAATGGGCCGT 11531 ||||||||||||||||| Sbjct 277709 CTGAGCTAATGGGCCGT 277693 >seq590 Length=37775 Score = 116 bits (128), Expect = 2e-21 Identities = 86/100 (86%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 11432 TATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||| || ||||||||| | || ||||||||| |||||||||| |||||||||| Sbjct 18980 TATACAAAAAATAAAAAAGTATTTTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGC 18921 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| |||||||||||||||||||| Sbjct 18920 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 18881 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 24510 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 24451 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 24450 CTGAGCTAATGGGCCG 24435 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||| ||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 18318 AAAAAATAAAACTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 18377 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 18378 GCTCTAACCAGCTGAGCTAATGGGCC 18403 >seq209 Length=212543 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| ||| | ||||||||| |||||||||| |||||||||||||||||||| Sbjct 54164 ATAAAAAAAGAAAGTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 54105 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 54104 CGACGCTCTAACCAACTGAGCTAATGGGCC 54075 Score = 105 bits (116), Expect = 3e-18 Identities = 85/102 (83%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| || || | | |||||| | ||||||||| |||||||||| || ||||| Sbjct 51200 AAATATTGACAAAAAAGAGAATCAACTCTGGCCCATGGGGGGATCGAACCCGCGGCCTTC 51141 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||| ||||||||||||||| Sbjct 51140 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 51099 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 51581 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 51640 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 51641 TGAGCTAATGGGCC 51654 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 53934 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 53875 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 53874 TGAGCTAATGGGCC 53861 >seq160 Length=244892 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 9938 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 9997 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 9998 CTGAGCTAATGGGCCG 10013 Score = 116 bits (128), Expect = 2e-21 Identities = 86/100 (86%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||| || ||||||||| | || ||||||||| |||||||||| |||||||||| Sbjct 15466 TATACAAAAAATAAAAAAGTATTTTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGC 15525 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| |||||||||||||||||||| Sbjct 15526 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 15565 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| |||| ||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 16128 AAAAATTAAATCTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 16069 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 16068 GCTCTAACCAGCTGAGCTAATGGGCC 16043 >seq311 Length=160881 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 89209 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 89150 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 89149 TGAGCTAATGGGCC 89136 >seq11 Length=2857411 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| || |||||||||||||||||||||||||| |||| Sbjct 1246995 TTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAG 1246936 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 1246935 CTGAGCTAATGGGCC 1246921 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485033302060