Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq35 141 8e-29
seq6 140 3e-28
seq234 132 4e-26
seq23 109 5e-19
>seq35
Length=832945
Score = 141 bits (156), Expect = 8e-29
Identities = 164/219 (75%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850
||||| ||||| |||||||| || ||||| || | ||| || ||| || ||| || |
Sbjct 773435 CGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG 773494
Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
||||||||||| || ||| ||||||| || | ||||||||||| ||||| || || |
Sbjct 773495 --TCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCT 773552
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | || || |||||||| ||| ||||| | | | ||||| || | ||||
Sbjct 773553 TGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGA 773612
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|||| || ||||| || || ||||| |||||||||||||
Sbjct 773613 TGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGC 773651
Score = 129 bits (142), Expect = 5e-25
Identities = 158/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCC 94855
|||||| |||||||| || ||||| || | ||| || ||| || ||| || | |||
Sbjct 773668 CACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG--TCC 773725
Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915
|||||||| || ||| | || || || | ||||||||||| ||||| || || |||||
Sbjct 773726 TCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 773785
Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975
| || || |||||||| ||| ||||| | | | ||||| || | ||||||||
Sbjct 773786 TGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTC 773845
Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| ||||| || || ||||| |||||||||||||
Sbjct 773846 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATGC 773879
Score = 129 bits (142), Expect = 5e-25
Identities = 158/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCC 94855
|||||| |||||||| || ||||| || | ||| || ||| || ||| || | |||
Sbjct 773896 CACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG--TCC 773953
Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915
|||||||| || ||| | || || || | ||||||||||| ||||| || || |||||
Sbjct 773954 TCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 774013
Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975
| || || |||||||| ||| ||||| | | | ||||| || | ||||||||
Sbjct 774014 TGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTC 774073
Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| ||||| || || ||||| |||||||||||||
Sbjct 774074 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATGC 774107
Score = 122 bits (134), Expect = 8e-23
Identities = 156/213 (73%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCC 94855
|||||| |||||||| || ||||| || | ||| || ||| || ||| || | |||
Sbjct 774124 CACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG--TCC 774181
Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915
|||||||| || ||| | || || || | ||||||||||| ||||| || || |||||
Sbjct 774182 TCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 774241
Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975
| || || |||||||| ||| ||||| | | | ||||| || | || |||||
Sbjct 774242 TGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGTC 774301
Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| ||||| || || ||||| ||||||||||||
Sbjct 774302 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 774334
>seq6
Length=3104374
Score = 140 bits (154), Expect = 3e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||| || || ||||| || | ||| || ||| || |||| | ||||||
Sbjct 2898463 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 2898404
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || ||| | ||||| | | ||||||||||| ||||| || || ||||| |
Sbjct 2898403 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 2898344
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || |||||||| ||| ||||||| | | ||||| || | |||||||| ||
Sbjct 2898343 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 2898284
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| |||||||||||||| || |||||
Sbjct 2898283 GCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254
>seq234
Length=227530
Score = 132 bits (146), Expect = 4e-26
Identities = 163/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851
|||| ||||| ||||| || || ||||| || | ||||||||| |||||||| |
Sbjct 9921 CGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAG--ATAGTGTTCGGC 9978
Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
||| |||| ||||| || | ||||| || | ||| |||||||||||||| |||||||
Sbjct 9979 CATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCTT 10038
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | ||| || || ||||| ||| || || | | ||||| |||| || |
Sbjct 10039 TGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTA 10098
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011
|||| || || ||||| || || ||||||||||||||| ||
Sbjct 10099 TGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCATGGTT 10139
>seq23
Length=1278451
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| |||||| || | |||||| ||||| || | ||| || || | ||| | |
Sbjct 1263191 CGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCA 1263250
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| || ||| | ||||| | | ||||| ||||| || || || || |||
Sbjct 1263251 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 1263310
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| ||| | | ||||| | | || || || | ||||||
Sbjct 1263311 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATG 1263370
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || ||||| |||||||||||||||||
Sbjct 1263371 GTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| |||||| || | ||| || ||||| || | ||| || || | ||| | |
Sbjct 1263419 CGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCA 1263478
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| || ||| | ||||| | | ||||| ||||| || || || || |||
Sbjct 1263479 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 1263538
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| ||| | | ||||| | | || || || | ||||||
Sbjct 1263539 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATG 1263598
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || ||||| |||||||||||||||||
Sbjct 1263599 GTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| |||||| || | ||| || ||||| || | ||| || || | ||| | |
Sbjct 1263647 CGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCA 1263706
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| || ||| | ||||| | | ||||| ||||| || || || || |||
Sbjct 1263707 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 1263766
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| ||| | | ||||| | | || || || | ||||||
Sbjct 1263767 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATG 1263826
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || ||||| |||||||||||||||||
Sbjct 1263827 GTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| |||||| || | ||| || ||||| || | ||| || || | ||| | |
Sbjct 1263875 CGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCA 1263934
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| || ||| | ||||| | | ||||| ||||| || || || || |||
Sbjct 1263935 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 1263994
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| ||| | | ||||| | | || || || | ||||||
Sbjct 1263995 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATG 1264054
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || ||||| |||||||||||||||||
Sbjct 1264055 GTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| |||||| || | ||| || ||||| || | ||| || || | ||| | |
Sbjct 1264103 CGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCA 1264162
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| || ||| | ||||| | | ||||| ||||| || || || || |||
Sbjct 1264163 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 1264222
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| ||| | | ||||| | | || || || | ||||||
Sbjct 1264223 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGATG 1264282
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| ||||| | ||||||||||||||||||||
Sbjct 1264283 GTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 1264317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448280356956600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |