Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq292 170 3e-38 seq411 127 3e-25 seq1 122 1e-23 >seq292 Length=147139 Score = 170 bits (188), Expect = 3e-38 Identities = 198/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| ||| || ||||||||||| || ||||| ||||| ||||| Sbjct 17825 CGCTAAGCGTCATCGCAAGGTTCTGCGCGATAACATCCAGGGTATCACGAAGCCCGCTAT 17766 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||||| || || || || ||| |||| ||| | |||| || |||| Sbjct 17765 CCGCCGTTTGGCTCGTCGCGGCGGTGTAAAACGTATCTCCGGACTCATCTACGAGGAGAC 17706 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || ||||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 17705 TCGTGGAGTGCTGAAGGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 17646 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| | | | ||||| ||||| |||||||| | || ||||| |||| ||||||| Sbjct 17645 ACACTCCTAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGTCAAGG 17586 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | | || ||||| || |||| Sbjct 17585 TCGCACGCTGTACGGTTTCGGCGGTTA 17559 >seq411 Length=108260 Score = 127 bits (140), Expect = 3e-25 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||| ||| ||||||||||||| || || || ||| |||| ||| | |||| || Sbjct 107134 GCTATCCGCCGTTTGGCTCGTCGTGGCGGTGTAAAACGTATCTCCGGACTCATCTACGAG 107193 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| ||||| || ||||| | || | | | |||||||| |||||| || ||| Sbjct 107194 GAGACTCGTGGAGTGCTGAAGGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTAC 107253 Query 16607 ACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGT 16666 ||||| ||||| || | ||||| ||||| |||||||| | || ||||| |||| | Sbjct 107254 ACCGAACACGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGG 107313 Query 16667 CAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||||| | | | || || || || ||||| Sbjct 107314 CAAGGCCGCACGCTGTACGGCTTCGGCGGTTAA 107346 >seq1 Length=2050314 Score = 122 bits (134), Expect = 1e-23 Identities = 110/136 (81%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | |||| || ||||||||||| || |||||||||||||| || Sbjct 1172622 GCCAAGCGCCATCGCA-AGGTCTTGCGTGATAACATCCAGGGTATCACCAAGCCAGCCAT 1172564 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||| ||||| || ||||| |||||| | || || ||| | || ||||| | Sbjct 1172563 TCGTCGTCTGGCCCGTCGCGGCGGAGTAAAGCGTATTTCAGGCTTGATTTACGAAGAAAC 1172504 Query 16552 TCGTGATGTTTTGAAG 16567 ||||| ||| |||||| Sbjct 1172503 TCGTGGTGTCTTGAAG 1172488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073430815955