Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1097 188 1e-43 seq756 179 7e-41 seq113 170 4e-38 seq828 122 2e-23 seq643 114 3e-21 seq800 111 3e-20 seq1150 109 1e-19 seq1365 102 2e-17 >seq1097 Length=5909 Score = 188 bits (208), Expect = 1e-43 Identities = 305/436 (70%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331 |||||| ||||| | ||||||| ||| ||||| || ||| | |||||||| || Sbjct 3758 CATGTCGGTATTAATATGATCACGATATATATGTCGCATATTTAGGTCATCTTGTTTAAA 3817 Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391 || | | | ||||||||| || | || || || || || || ||||||| ||||| Sbjct 3818 CATTATAATCATGTTTGCATTGTCACGTATAAGATGTTTTGGGATATGTGTATATGTTTG 3877 Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTG 7451 ||| | ||||||| |||| || |||||| |||||||| |||||| | | || | Sbjct 3878 ACACAAATAGAAGGAATCAATATTCTTGTGACGACCCATACAGAAATACGAACGAATATT 3937 Query 7452 ATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTC 7511 || |||||||||||||||||||||||||| ||||| | |||||| ||||||| || | Sbjct 3938 GTCTTGTTTTTCACAAGCAACATCGTCAAAAATCATTATGGAGTTCTGCTTAGCTTCACC 3997 Query 7512 AGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGA-ATCCAATACCATCAATCTGTT 7570 || | ||| | ||||| | |||||| | || | || || || | ||| ||| Sbjct 3998 GGGTGCTAATACTGATTCATTCTGTGAGAATGT-ATGATAGCCCATCCCTTTAATTGGTT 4056 Query 7571 TAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATA 7630 | | | | |||||| ||| || || |||||| || |||||| ||| || | Sbjct 4057 TGATTAACTTTTCCAGGTACTCGTATTTAGGTTGGAATAGGCTCTTTGAAAAAACGTAAA 4116 Query 7631 TATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTC 7690 ||||||||||| | || || |||||| |||| ||| ||||| | || ||||| | Sbjct 4117 TATTCTCAAACTTTAATCCATTTGGACTCTCAATTAGACTCAGCATAATGTTTGTCTTCC 4176 Query 7691 CACAGTTTGATGGCCC 7706 ||||||| || || || Sbjct 4177 CACAGTTGGAGGGGCC 4192 >seq756 Length=22245 Score = 179 bits (198), Expect = 7e-41 Identities = 303/436 (69%), Gaps = 2/436 (0%) Strand=Plus/Minus Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331 |||||| ||||| | ||||||| ||| ||||| || ||| | |||||||| || Sbjct 18765 CATGTCGGTATTAATATGATCACGATATATATGTCGCATATTTAGGTCATCTTGTTTAAA 18706 Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391 || | | | ||||||||| || | || || || || || || ||||||| ||||| Sbjct 18705 CATTATAATCATGTTTGCATTGTCACGTATAAGATGTTTTGGGATATGTGTATATGTTTG 18646 Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTG 7451 ||| | ||||||| |||| || |||||| |||||||| |||||| | | || | Sbjct 18645 ACACAAATAGAAGGAATCAATATTCTTGTGACGACCCATACAGAAATACGAACGAATATT 18586 Query 7452 ATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTC 7511 || ||||||||||| |||||||||||||| ||||| | ||||| |||| || || | Sbjct 18585 GTCTTGTTTTTCACATGCAACATCGTCAAAAATCATTATAGAGTTCTGCTTGGCTTCACC 18526 Query 7512 AGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGA-ATCCAATACCATCAATCTGTT 7570 || | ||| | ||||| | |||||| | || | || || || | ||| ||| Sbjct 18525 GGGTGCTAATACTGATTCATTCTGTGAGAATGT-ATGATAGCCCATCCCTTTAATTGGTT 18467 Query 7571 TAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATA 7630 | | | | |||||| ||| ||| || |||||| || |||||| ||| || | Sbjct 18466 TGATTAACTTTTCCAGGTACTCATATTTGGGTTGGAATAGGCTCTTTGAAAAAACGTAAA 18407 Query 7631 TATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTC 7690 ||||||||||| | || || |||||| |||| ||| ||||| | || ||||| | Sbjct 18406 TATTCTCAAACTTTAATCCATTTGGACTCTCAATTAGACTCAGCATAATGTTTGTCTTCC 18347 Query 7691 CACAGTTTGATGGCCC 7706 ||||||| || || || Sbjct 18346 CACAGTTGGAGGGGCC 18331 >seq113 Length=368062 Score = 170 bits (188), Expect = 4e-38 Identities = 301/436 (69%), Gaps = 2/436 (0%) Strand=Plus/Minus Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331 |||||| ||||| | ||||||| ||| || || || ||| | |||||||| || Sbjct 23858 CATGTCGGTATTAATATGATCACGATATATTTGTCGCATATTTAGGTCATCTTGTTTAAA 23799 Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391 || | | | ||||||||| |||| || | || || || || ||||||| ||||| Sbjct 23798 CATTATAATCATGTTTGCATTGTCTCGTATAATATGTTTTGGGATATGTGTATATGTTTG 23739 Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTG 7451 ||| | ||||||| |||| || |||||| |||||||| |||||| | | || | Sbjct 23738 ACACAAATAGAAGGAATCAATATTCTTGTGACGACCCATACAGAAATACGAACGAATATT 23679 Query 7452 ATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTC 7511 || ||||||||||| |||||||||||||| ||||| | ||||| | || || || | Sbjct 23678 GTCTTGTTTTTCACATGCAACATCGTCAAAAATCATTATAGAGTTCTGTTTGGCTTCACC 23619 Query 7512 AGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGA-ATCCAATACCATCAATCTGTT 7570 || | ||| | ||||| | |||||| | || | || || || | ||| ||| Sbjct 23618 GGGTGCTAATACTGATTCATTCTGTGAGAATGT-ATGATAGCCCATCCCTTTAATTGGTT 23560 Query 7571 TAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATA 7630 | | | | |||||| ||| ||| || |||||| || |||||| ||| || | Sbjct 23559 TGATTAACTTTTCCAGGTACTCATATTTGGGTTGGAATAGGCTCTTTGAAAAAACGTAAA 23500 Query 7631 TATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTC 7690 ||||||||||| | || || |||||| |||| ||| ||||| | || ||||| | Sbjct 23499 TATTCTCAAACTTTAATCCATTTGGACTCTCAATTAGACTCAGCATAATGTTTGTCTTCC 23440 Query 7691 CACAGTTTGATGGCCC 7706 ||||||| || || || Sbjct 23439 CACAGTTGGAGGGGCC 23424 >seq828 Length=45532 Score = 122 bits (134), Expect = 2e-23 Identities = 249/367 (68%), Gaps = 5/367 (1%) Strand=Plus/Minus Query 4337 GTGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACA 4396 || |||| |||||| | ||||||||| | | |||||||| | |||| || ||| | Sbjct 20840 GTTTAGGATACATCTTAGAAGTAGATTTGAAATATCCTGATTCTATACACAATAAACATA 20781 Query 4397 AAGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCA 4456 | | |||| || |||| ||| || | | | || | || ||| |||| | | Sbjct 20780 ATAGTTTACCATTCTGCCTCGAAAATAAGATTCTCTCAGGCGGAAAACAAACAAAATTGA 20721 Query 4457 CGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTT 4516 | | | | |||||||| |||| | | || || | || | ||| | |||| Sbjct 20720 TAGCGGATTTATCTGATAAAAAGAATTGTATAATACATTTGAAGCAGTTGCAGTTATGTA 20661 Query 4517 TAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACT 4576 |||| || | | || | | |||||| | ||| || || ||||||| || Sbjct 20660 TAGAACAAGATATGATTTTAGAAAAAATATCGCGAGTATTATCTTTCAAGCAATCCTGCT 20601 Query 4577 GGCTCAAATCATATATCGATAAAAATAC--CGCATGCCGAAAACTAGCTAAGAATGAGTT 4634 |||| ||| | ||||| ||| |||||| | |||| ||||| |||||||||||||||| Sbjct 20600 GGCTTAAAACCTATATTGATCTAAATACATCCCATG--GAAAAGTAGCTAAGAATGAGTT 20543 Query 4635 CGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 || | ||||||||||||||||||| |||||| || | || || |||||||||||||| Sbjct 20542 TGAGATAAACTTTTATAAATTAATGGTTAATGCTGTCTACGGTAAAACGATGGAGAATGT 20483 Query 4695 ACGAAAA 4701 | ||||| Sbjct 20482 A-GAAAA 20477 Score = 122 bits (134), Expect = 2e-23 Identities = 249/367 (68%), Gaps = 5/367 (1%) Strand=Plus/Minus Query 4337 GTGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACA 4396 || |||| |||||| | ||||||||| | | |||||||| | |||| || ||| | Sbjct 26631 GTTTAGGATACATCTTAGAAGTAGATTTGAAATATCCTGATTCTATACACAATAAACATA 26572 Query 4397 AAGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCA 4456 | | |||| || |||| ||| || | | | || | || ||| |||| | | Sbjct 26571 ATAGTTTACCATTCTGCCTCGAAAATAAGATTCTCTCAGGCGGAAAACAAACAAAATTGA 26512 Query 4457 CGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTT 4516 | | | | |||||||| |||| | | || || | || | ||| | |||| Sbjct 26511 TAGCGGATTTATCTGATAAAAAGAATTGTATAATACATTTGAAGCAGTTGCAGTTATGTA 26452 Query 4517 TAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACT 4576 |||| || | | || | | |||||| | ||| || || ||||||| || Sbjct 26451 TAGAACAAGATATGATTTTAGAAAAAATATCGCGAGTATTATCTTTCAAGCAATCCTGCT 26392 Query 4577 GGCTCAAATCATATATCGATAAAAATAC--CGCATGCCGAAAACTAGCTAAGAATGAGTT 4634 |||| ||| | ||||| ||| |||||| | |||| ||||| |||||||||||||||| Sbjct 26391 GGCTTAAAACCTATATTGATCTAAATACATCCCATG--GAAAAGTAGCTAAGAATGAGTT 26334 Query 4635 CGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 || | ||||||||||||||||||| |||||| || | || || |||||||||||||| Sbjct 26333 TGAGATAAACTTTTATAAATTAATGGTTAATGCTGTCTACGGTAAAACGATGGAGAATGT 26274 Query 4695 ACGAAAA 4701 | ||||| Sbjct 26273 A-GAAAA 26268 >seq643 Length=40655 Score = 114 bits (126), Expect = 3e-21 Identities = 113/143 (79%), Gaps = 5/143 (3%) Strand=Plus/Minus Query 4561 TTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATAC--CGCATGCCGAAAAC 4618 ||| ||||||| ||||| ||| | ||||| ||| |||||| | ||| ||||| Sbjct 31079 TTTAAGCAATCCTGTTGGCTTAAACCCTATATTGATCTAAATACATCCCATA--GAAAAG 31022 Query 4619 TAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAA 4678 |||||||||||||||| || | ||||||||||||||||||| |||||| || | || | Sbjct 31021 TAGCTAAGAATGAGTTTGAGATAAACTTTTATAAATTAATGGTTAATGCTGTCTACGGTA 30962 Query 4679 AGACGATGGAGAATGTACGAAAA 4701 | ||||||||||||||| ||||| Sbjct 30961 AAACGATGGAGAATGTA-GAAAA 30940 >seq800 Length=17498 Score = 111 bits (122), Expect = 3e-20 Identities = 110/139 (79%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 4565 AGCAATCAGACTGGCTCAAATCATATATCGATAAAAATAC--CGCATGCCGAAAACTAGC 4622 ||||||| |||||| ||| | ||||| |||| |||||| | ||| ||||| |||| Sbjct 661 AGCAATCCTGCTGGCTTAAACCCTATATTGATATAAATACATCCCATA--GAAAAGTAGC 718 Query 4623 TAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGAC 4682 ||||||||||| || | |||||||||||||||||| |||||| || | || || || Sbjct 719 AAAGAATGAGTTTGAGATAAACTTTTATAAATTAATAGTTAATGCCGTCTACGGTAAAAC 778 Query 4683 GATGGAGAATGTACGAAAA 4701 ||||||||||||| ||||| Sbjct 779 GATGGAGAATGTA-GAAAA 796 >seq1150 Length=5471 Score = 109 bits (120), Expect = 1e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| ||||||||| || | ||||||||||||||| || | | | || Sbjct 4409 ACATGATCATTATAAATATGTTTAATATTCATTTCATCTTGTTTAAAAATTATAATTAAA 4468 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || ||||| || | || | || || |||||| ||||||||||||||| |||||||| Sbjct 4469 TTAGCATTGTCACGTATTAAATGTTTTGGTATTTTTGTATAAGTTTGACATAGATAGAAA 4528 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGAT-CCTGTTTTTC 7463 ||| | || || || ||||| || || ||| || || | || || | ||||| || Sbjct 4529 GAGTCTATATGTTTATGACGACCTATACAAAAATAATCTCTTAT-TGTTGTTTGTTTATC 4587 Query 7464 ACAAGCAACATCGTCAAATATCAT 7487 ||| ||||| ||||||||||| Sbjct 4588 ACAGATTACATCATCAAATATCAT 4611 >seq1365 Length=3290 Score = 102 bits (112), Expect = 2e-17 Identities = 233/349 (67%), Gaps = 4/349 (1%) Strand=Plus/Plus Query 4348 ATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACAAAGATCTACCT 4407 ||| | ||||||||||| | ||||| || || | ||| || ||| || | |||| Sbjct 568 ATCTTAGAAGTAGATCTGAAATATCCCGATGATATTCATAATAAACATAATAGTTTACCA 627 Query 4408 TTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCACGACAACTCTG 4467 || ||||| ||| || | || || || || |||||| |||| | | | | | Sbjct 628 TTTTGCCCCGAAAATAAAATTCCTCCAGGAAGAAAGCAATCAAAATTAATTGCTGATTTA 687 Query 4468 TACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGT 4527 ||||||||||||||| | ||||| | ||| | ||| | | ||| |||| |||| Sbjct 688 ACAGATAAAAATAATTATATAATTCATTTAAAACAATTGCAGCTATGCATAGAGCAAGGT 747 Query 4528 TTAGTTCTTAAGAAAATACACCTAG--TCTTGAAATTTGAGCAATCAGACTGGCTCAAAT 4585 | || | |||||| | | || | | || | ||| | || || ||| | ||| Sbjct 748 ATGATTTT--AGAAAAAATATCTCGGATATTATATTTTAAACAGTCCTGTTGGTTAAAAC 805 Query 4586 CATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCT 4645 | ||||| || || || || ||||| ||||| ||||||||||| | ||||| Sbjct 806 CTTATATTGACTTAAGCACATCACTTAGAAAATTAGCTTTAAATGAGTTCGAGATAAACT 865 Query 4646 TTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 |||||||||||||| ||||| || | ||| || || ||||| ||||| Sbjct 866 TTTATAAATTAATGGTAAATGCCGTCTATGGTAAAACAATGGAAAATGT 914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97972148731990