Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq1097 188 1e-43
seq756 179 7e-41
seq113 170 4e-38
seq828 122 2e-23
seq643 114 3e-21
seq800 111 3e-20
seq1150 109 1e-19
seq1365 102 2e-17
>seq1097
Length=5909
Score = 188 bits (208), Expect = 1e-43
Identities = 305/436 (70%), Gaps = 2/436 (0%)
Strand=Plus/Plus
Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331
|||||| ||||| | ||||||| ||| ||||| || ||| | |||||||| ||
Sbjct 3758 CATGTCGGTATTAATATGATCACGATATATATGTCGCATATTTAGGTCATCTTGTTTAAA 3817
Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391
|| | | | ||||||||| || | || || || || || || ||||||| |||||
Sbjct 3818 CATTATAATCATGTTTGCATTGTCACGTATAAGATGTTTTGGGATATGTGTATATGTTTG 3877
Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTG 7451
||| | ||||||| |||| || |||||| |||||||| |||||| | | || |
Sbjct 3878 ACACAAATAGAAGGAATCAATATTCTTGTGACGACCCATACAGAAATACGAACGAATATT 3937
Query 7452 ATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTC 7511
|| |||||||||||||||||||||||||| ||||| | |||||| ||||||| || |
Sbjct 3938 GTCTTGTTTTTCACAAGCAACATCGTCAAAAATCATTATGGAGTTCTGCTTAGCTTCACC 3997
Query 7512 AGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGA-ATCCAATACCATCAATCTGTT 7570
|| | ||| | ||||| | |||||| | || | || || || | ||| |||
Sbjct 3998 GGGTGCTAATACTGATTCATTCTGTGAGAATGT-ATGATAGCCCATCCCTTTAATTGGTT 4056
Query 7571 TAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATA 7630
| | | | |||||| ||| || || |||||| || |||||| ||| || |
Sbjct 4057 TGATTAACTTTTCCAGGTACTCGTATTTAGGTTGGAATAGGCTCTTTGAAAAAACGTAAA 4116
Query 7631 TATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTC 7690
||||||||||| | || || |||||| |||| ||| ||||| | || ||||| |
Sbjct 4117 TATTCTCAAACTTTAATCCATTTGGACTCTCAATTAGACTCAGCATAATGTTTGTCTTCC 4176
Query 7691 CACAGTTTGATGGCCC 7706
||||||| || || ||
Sbjct 4177 CACAGTTGGAGGGGCC 4192
>seq756
Length=22245
Score = 179 bits (198), Expect = 7e-41
Identities = 303/436 (69%), Gaps = 2/436 (0%)
Strand=Plus/Minus
Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331
|||||| ||||| | ||||||| ||| ||||| || ||| | |||||||| ||
Sbjct 18765 CATGTCGGTATTAATATGATCACGATATATATGTCGCATATTTAGGTCATCTTGTTTAAA 18706
Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391
|| | | | ||||||||| || | || || || || || || ||||||| |||||
Sbjct 18705 CATTATAATCATGTTTGCATTGTCACGTATAAGATGTTTTGGGATATGTGTATATGTTTG 18646
Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTG 7451
||| | ||||||| |||| || |||||| |||||||| |||||| | | || |
Sbjct 18645 ACACAAATAGAAGGAATCAATATTCTTGTGACGACCCATACAGAAATACGAACGAATATT 18586
Query 7452 ATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTC 7511
|| ||||||||||| |||||||||||||| ||||| | ||||| |||| || || |
Sbjct 18585 GTCTTGTTTTTCACATGCAACATCGTCAAAAATCATTATAGAGTTCTGCTTGGCTTCACC 18526
Query 7512 AGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGA-ATCCAATACCATCAATCTGTT 7570
|| | ||| | ||||| | |||||| | || | || || || | ||| |||
Sbjct 18525 GGGTGCTAATACTGATTCATTCTGTGAGAATGT-ATGATAGCCCATCCCTTTAATTGGTT 18467
Query 7571 TAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATA 7630
| | | | |||||| ||| ||| || |||||| || |||||| ||| || |
Sbjct 18466 TGATTAACTTTTCCAGGTACTCATATTTGGGTTGGAATAGGCTCTTTGAAAAAACGTAAA 18407
Query 7631 TATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTC 7690
||||||||||| | || || |||||| |||| ||| ||||| | || ||||| |
Sbjct 18406 TATTCTCAAACTTTAATCCATTTGGACTCTCAATTAGACTCAGCATAATGTTTGTCTTCC 18347
Query 7691 CACAGTTTGATGGCCC 7706
||||||| || || ||
Sbjct 18346 CACAGTTGGAGGGGCC 18331
>seq113
Length=368062
Score = 170 bits (188), Expect = 4e-38
Identities = 301/436 (69%), Gaps = 2/436 (0%)
Strand=Plus/Minus
Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331
|||||| ||||| | ||||||| ||| || || || ||| | |||||||| ||
Sbjct 23858 CATGTCGGTATTAATATGATCACGATATATTTGTCGCATATTTAGGTCATCTTGTTTAAA 23799
Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391
|| | | | ||||||||| |||| || | || || || || ||||||| |||||
Sbjct 23798 CATTATAATCATGTTTGCATTGTCTCGTATAATATGTTTTGGGATATGTGTATATGTTTG 23739
Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTG 7451
||| | ||||||| |||| || |||||| |||||||| |||||| | | || |
Sbjct 23738 ACACAAATAGAAGGAATCAATATTCTTGTGACGACCCATACAGAAATACGAACGAATATT 23679
Query 7452 ATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTC 7511
|| ||||||||||| |||||||||||||| ||||| | ||||| | || || || |
Sbjct 23678 GTCTTGTTTTTCACATGCAACATCGTCAAAAATCATTATAGAGTTCTGTTTGGCTTCACC 23619
Query 7512 AGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGA-ATCCAATACCATCAATCTGTT 7570
|| | ||| | ||||| | |||||| | || | || || || | ||| |||
Sbjct 23618 GGGTGCTAATACTGATTCATTCTGTGAGAATGT-ATGATAGCCCATCCCTTTAATTGGTT 23560
Query 7571 TAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATA 7630
| | | | |||||| ||| ||| || |||||| || |||||| ||| || |
Sbjct 23559 TGATTAACTTTTCCAGGTACTCATATTTGGGTTGGAATAGGCTCTTTGAAAAAACGTAAA 23500
Query 7631 TATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTC 7690
||||||||||| | || || |||||| |||| ||| ||||| | || ||||| |
Sbjct 23499 TATTCTCAAACTTTAATCCATTTGGACTCTCAATTAGACTCAGCATAATGTTTGTCTTCC 23440
Query 7691 CACAGTTTGATGGCCC 7706
||||||| || || ||
Sbjct 23439 CACAGTTGGAGGGGCC 23424
>seq828
Length=45532
Score = 122 bits (134), Expect = 2e-23
Identities = 249/367 (68%), Gaps = 5/367 (1%)
Strand=Plus/Minus
Query 4337 GTGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACA 4396
|| |||| |||||| | ||||||||| | | |||||||| | |||| || ||| |
Sbjct 20840 GTTTAGGATACATCTTAGAAGTAGATTTGAAATATCCTGATTCTATACACAATAAACATA 20781
Query 4397 AAGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCA 4456
| | |||| || |||| ||| || | | | || | || ||| |||| | |
Sbjct 20780 ATAGTTTACCATTCTGCCTCGAAAATAAGATTCTCTCAGGCGGAAAACAAACAAAATTGA 20721
Query 4457 CGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTT 4516
| | | | |||||||| |||| | | || || | || | ||| | ||||
Sbjct 20720 TAGCGGATTTATCTGATAAAAAGAATTGTATAATACATTTGAAGCAGTTGCAGTTATGTA 20661
Query 4517 TAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACT 4576
|||| || | | || | | |||||| | ||| || || ||||||| ||
Sbjct 20660 TAGAACAAGATATGATTTTAGAAAAAATATCGCGAGTATTATCTTTCAAGCAATCCTGCT 20601
Query 4577 GGCTCAAATCATATATCGATAAAAATAC--CGCATGCCGAAAACTAGCTAAGAATGAGTT 4634
|||| ||| | ||||| ||| |||||| | |||| ||||| ||||||||||||||||
Sbjct 20600 GGCTTAAAACCTATATTGATCTAAATACATCCCATG--GAAAAGTAGCTAAGAATGAGTT 20543
Query 4635 CGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694
|| | ||||||||||||||||||| |||||| || | || || ||||||||||||||
Sbjct 20542 TGAGATAAACTTTTATAAATTAATGGTTAATGCTGTCTACGGTAAAACGATGGAGAATGT 20483
Query 4695 ACGAAAA 4701
| |||||
Sbjct 20482 A-GAAAA 20477
Score = 122 bits (134), Expect = 2e-23
Identities = 249/367 (68%), Gaps = 5/367 (1%)
Strand=Plus/Minus
Query 4337 GTGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACA 4396
|| |||| |||||| | ||||||||| | | |||||||| | |||| || ||| |
Sbjct 26631 GTTTAGGATACATCTTAGAAGTAGATTTGAAATATCCTGATTCTATACACAATAAACATA 26572
Query 4397 AAGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCA 4456
| | |||| || |||| ||| || | | | || | || ||| |||| | |
Sbjct 26571 ATAGTTTACCATTCTGCCTCGAAAATAAGATTCTCTCAGGCGGAAAACAAACAAAATTGA 26512
Query 4457 CGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTT 4516
| | | | |||||||| |||| | | || || | || | ||| | ||||
Sbjct 26511 TAGCGGATTTATCTGATAAAAAGAATTGTATAATACATTTGAAGCAGTTGCAGTTATGTA 26452
Query 4517 TAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACT 4576
|||| || | | || | | |||||| | ||| || || ||||||| ||
Sbjct 26451 TAGAACAAGATATGATTTTAGAAAAAATATCGCGAGTATTATCTTTCAAGCAATCCTGCT 26392
Query 4577 GGCTCAAATCATATATCGATAAAAATAC--CGCATGCCGAAAACTAGCTAAGAATGAGTT 4634
|||| ||| | ||||| ||| |||||| | |||| ||||| ||||||||||||||||
Sbjct 26391 GGCTTAAAACCTATATTGATCTAAATACATCCCATG--GAAAAGTAGCTAAGAATGAGTT 26334
Query 4635 CGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694
|| | ||||||||||||||||||| |||||| || | || || ||||||||||||||
Sbjct 26333 TGAGATAAACTTTTATAAATTAATGGTTAATGCTGTCTACGGTAAAACGATGGAGAATGT 26274
Query 4695 ACGAAAA 4701
| |||||
Sbjct 26273 A-GAAAA 26268
>seq643
Length=40655
Score = 114 bits (126), Expect = 3e-21
Identities = 113/143 (79%), Gaps = 5/143 (3%)
Strand=Plus/Minus
Query 4561 TTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATAC--CGCATGCCGAAAAC 4618
||| ||||||| ||||| ||| | ||||| ||| |||||| | ||| |||||
Sbjct 31079 TTTAAGCAATCCTGTTGGCTTAAACCCTATATTGATCTAAATACATCCCATA--GAAAAG 31022
Query 4619 TAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAA 4678
|||||||||||||||| || | ||||||||||||||||||| |||||| || | || |
Sbjct 31021 TAGCTAAGAATGAGTTTGAGATAAACTTTTATAAATTAATGGTTAATGCTGTCTACGGTA 30962
Query 4679 AGACGATGGAGAATGTACGAAAA 4701
| ||||||||||||||| |||||
Sbjct 30961 AAACGATGGAGAATGTA-GAAAA 30940
>seq800
Length=17498
Score = 111 bits (122), Expect = 3e-20
Identities = 110/139 (79%), Gaps = 5/139 (4%)
Strand=Plus/Plus
Query 4565 AGCAATCAGACTGGCTCAAATCATATATCGATAAAAATAC--CGCATGCCGAAAACTAGC 4622
||||||| |||||| ||| | ||||| |||| |||||| | ||| ||||| ||||
Sbjct 661 AGCAATCCTGCTGGCTTAAACCCTATATTGATATAAATACATCCCATA--GAAAAGTAGC 718
Query 4623 TAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGAC 4682
||||||||||| || | |||||||||||||||||| |||||| || | || || ||
Sbjct 719 AAAGAATGAGTTTGAGATAAACTTTTATAAATTAATAGTTAATGCCGTCTACGGTAAAAC 778
Query 4683 GATGGAGAATGTACGAAAA 4701
||||||||||||| |||||
Sbjct 779 GATGGAGAATGTA-GAAAA 796
>seq1150
Length=5471
Score = 109 bits (120), Expect = 1e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
|||||||||| ||||||||| || | ||||||||||||||| || | | | ||
Sbjct 4409 ACATGATCATTATAAATATGTTTAATATTCATTTCATCTTGTTTAAAAATTATAATTAAA 4468
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
|| ||||| || | || | || || |||||| ||||||||||||||| ||||||||
Sbjct 4469 TTAGCATTGTCACGTATTAAATGTTTTGGTATTTTTGTATAAGTTTGACATAGATAGAAA 4528
Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGAT-CCTGTTTTTC 7463
||| | || || || ||||| || || ||| || || | || || | ||||| ||
Sbjct 4529 GAGTCTATATGTTTATGACGACCTATACAAAAATAATCTCTTAT-TGTTGTTTGTTTATC 4587
Query 7464 ACAAGCAACATCGTCAAATATCAT 7487
||| ||||| |||||||||||
Sbjct 4588 ACAGATTACATCATCAAATATCAT 4611
>seq1365
Length=3290
Score = 102 bits (112), Expect = 2e-17
Identities = 233/349 (67%), Gaps = 4/349 (1%)
Strand=Plus/Plus
Query 4348 ATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACAAAGATCTACCT 4407
||| | ||||||||||| | ||||| || || | ||| || ||| || | ||||
Sbjct 568 ATCTTAGAAGTAGATCTGAAATATCCCGATGATATTCATAATAAACATAATAGTTTACCA 627
Query 4408 TTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCACGACAACTCTG 4467
|| ||||| ||| || | || || || || |||||| |||| | | | | |
Sbjct 628 TTTTGCCCCGAAAATAAAATTCCTCCAGGAAGAAAGCAATCAAAATTAATTGCTGATTTA 687
Query 4468 TACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGT 4527
||||||||||||||| | ||||| | ||| | ||| | | ||| |||| ||||
Sbjct 688 ACAGATAAAAATAATTATATAATTCATTTAAAACAATTGCAGCTATGCATAGAGCAAGGT 747
Query 4528 TTAGTTCTTAAGAAAATACACCTAG--TCTTGAAATTTGAGCAATCAGACTGGCTCAAAT 4585
| || | |||||| | | || | | || | ||| | || || ||| | |||
Sbjct 748 ATGATTTT--AGAAAAAATATCTCGGATATTATATTTTAAACAGTCCTGTTGGTTAAAAC 805
Query 4586 CATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCT 4645
| ||||| || || || || ||||| ||||| ||||||||||| | |||||
Sbjct 806 CTTATATTGACTTAAGCACATCACTTAGAAAATTAGCTTTAAATGAGTTCGAGATAAACT 865
Query 4646 TTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694
|||||||||||||| ||||| || | ||| || || ||||| |||||
Sbjct 866 TTTATAAATTAATGGTAAATGCCGTCTATGGTAAAACAATGGAAAATGT 914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97972148731990
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