Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq328 580 1e-160 seq111 138 1e-27 >seq328 Length=165906 Score = 580 bits (642), Expect = 1e-160 Identities = 1265/1878 (67%), Gaps = 26/1878 (1%) Strand=Plus/Minus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||| | ||| ||||| || | | || || ||||| || |||| ||| |||||||| Sbjct 107408 TTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCG 107349 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 |||||||| || |||| | ||||||| || || | ||| || | || Sbjct 107348 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGC 107289 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || | ||| | ||| | || ||||||||||| || || || || || || |||||| Sbjct 107288 TCGGCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCC 107229 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62224 || || || | | || || ||||||||| | |||||||||| |||| || || Sbjct 107228 ATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCG-AACATT 107170 Query 62225 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 || |||| |||| |||| |||||||| || | | || || || |||| || || Sbjct 107169 TTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCAT 107110 Query 62282 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62341 ||||||| |||||| | ||| |||||| | || | | ||| |||| || ||||| Sbjct 107109 ATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTG 107050 Query 62342 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62401 |||||| ||||| ||||||| | || || |||||| | ||||| ||||| | || || Sbjct 107049 AAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTC 106990 Query 62402 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62461 ||||| |||| |||||| ||||| ||||| || |||||||| || || || || ||| Sbjct 106989 GTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATT 106930 Query 62462 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 62521 |||| |||| | || | || | ||||| || || ||||| ||| | | || || Sbjct 106929 CCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAGTTCGTTGG 106870 Query 62522 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATG 62580 ||||||||| || || || | | || |||| ||| | Sbjct 106869 AGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACT-TCCTTTATAGG 106811 Query 62581 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 62640 | ||||| || || | | || ||||||||||| || ||||| || || |||||| Sbjct 106810 TTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATAAA 106751 Query 62641 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 62700 | ||||| || || | | |||| | ||||| || ||| | ||| || | Sbjct 106750 TAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACGCA 106691 Query 62701 AGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62760 ||||| || ||||| || || ||||||||||| ||||| || || | ||| || || Sbjct 106690 TTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAAT 106631 Query 62761 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62820 | || | | ||||||||| | || ||||| || || ||||| |||||||| |||||| Sbjct 106630 TGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTT 106571 Query 62821 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTA 62877 | ||| |||| ||||| || | ||| ||||||||| ||| ||| Sbjct 106570 TAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTTCTGGTGTTA 106511 Query 62878 CAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62937 |||||||||| | |||| || || | ||| ||||| || | ||||| || | | | Sbjct 106510 CAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGT 106451 Query 62938 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 62997 | | | || || || || | |||||| || || ||||| || | |||||||||||| | Sbjct 106450 ACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGC 106391 Query 62998 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63057 ||||| | ||||| | ||||||| |||| ||| |||| |||||||||||| || |||| Sbjct 106390 TCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATT 106331 Query 63058 CTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCT 63115 ||||||| || ||| | ||||| |||| || | | | |||| | | ||| |||| Sbjct 106330 CTATAATGGCAAACCATAACGACT-GAGCTTTCACTGTTCGATTAGCACGTCC---CTCT 106275 Query 63116 TTCGTATAGTGTATACAA--TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 | | ||| | | | || | | || || | || |||||||||| | | ||||||| Sbjct 106274 TGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGA 106215 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAG 63232 |||| || ||||||||||||||||| | | | | | ||||| | |||||||| || || Sbjct 106214 CATTTATGTGGACACATCAACGACCAGTTTTCATT-TGCTTCAACCCGTTTCATGAAAAG 106156 Query 63233 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63292 ||| |||||||| | ||| ||| ||||| | | || | ||| || ||||| || || Sbjct 106155 ATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTCCAGTGTT 106096 Query 63293 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63352 |||| || || | || | | || ||| |||||||| || || || || || || | Sbjct 106095 TCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAA 106036 Query 63353 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63412 | ||||| | ||| ||||||||||| | |||| || |||||| | ||||| Sbjct 106035 GGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAATACTCT 105976 Query 63413 CAACATTGGAA-TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471 | |||||||| |||| || ||||| |||| || || || | || | | || ||| Sbjct 105975 TAGCATTGGAACTAAT-CCATTTGAAGTACCGTTCGTTCCACATATGGAAGTGCCTTTGG 105917 Query 63472 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531 |||||||| | || || || ||||| || || ||| || || | ||| ||| Sbjct 105916 CACGAATACAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCATTGCACATT 105857 Query 63532 GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACA 63589 ||| | | | | | ||||| || || ||| ||| |||| | | |||||||| Sbjct 105856 GTTCAACTGATTTAAAAATACCTTCAATTGAATC--CGAATTCATTGTCAAAAGAAAACA 105799 Query 63590 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 || | ||| | ||| | || | ||| ||| | || || || || |||||||| Sbjct 105798 TGAGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCATGCGTAAA 105739 Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63709 || || |||||||| ||||| || |||| ||||| | ||||| | |||||| Sbjct 105738 ATATCGCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGTCTCCATGAAT 105679 Query 63710 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63769 || | ||||| ||||||| |||||| || || | || | || || |||||||| Sbjct 105678 ACCAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTTCCCATTTATTTT 105619 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63829 | || ||||| || | || ||||| ||||||||||| || || || || || Sbjct 105618 AAGTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCGAAATCACGATC 105559 Query 63830 GTAAATAATAACCGAGTT 63847 ||||||||| | ||||| Sbjct 105558 ATAAATAATAGCAGAGTT 105541 >seq111 Length=362587 Score = 138 bits (152), Expect = 1e-27 Identities = 288/427 (67%), Gaps = 3/427 (1%) Strand=Plus/Plus Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 || || |||||||| ||||| ||||| | | || || |||||||| || || || ||| Sbjct 244663 GCAAAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCG 244722 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||| ||||||||||| || |||||||| || || || || || ||||||||| Sbjct 244723 GGCATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATT 244782 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATC 33483 ||||| || || ||||||||||||| | ||| || | || || | || | |||| Sbjct 244783 CCTTCCACGGCTGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 244842 Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543 || | ||||| || ||||| |||||| ||||| || || | ||||| || Sbjct 244843 CAGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGAAC 244902 Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 | |||| || || || | || || || || | | || ||||| || Sbjct 244903 AAGTAGTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 244962 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 || || | ||| || ||||| ||||| || |||||||| || | ||||| || ||||| Sbjct 244963 GAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGATCTGC 245022 Query 33664 ACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 || || || || || || ||| ||| || || || || || || ||| || || Sbjct 245023 ACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGAAG 245082 Query 33724 AACGCCA 33730 || |||| Sbjct 245083 AAGGCCA 245089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932132464600