Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq252 172 5e-38 seq328 116 4e-21 seq234 86.0 6e-12 >seq252 Length=176535 Score = 172 bits (190), Expect = 5e-38 Identities = 218/297 (73%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTAC-GCAATGAGGGTAAAATTCACGGATA 71736 ||||| || ||||| | || |||| || || || | ||||| || || ||||||| Sbjct 29760 GATGACCTGTGGAACTCGGCCCAGCTGCAACTGGTGCGA-GAGGGCAAGATGCACGGATT 29818 Query 71737 CCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCT 71796 || ||||||||||||||||| ||||| ||||||||||| || || || |||||||| Sbjct 29819 TCTGCGCATGTACTGGGCCAAGAAGATACTCGAGTGGACGGCCACGCCGGAACAGGCGCT 29878 Query 71797 CGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTA 71856 |||||| || ||| || ||||| | |||||||| ||||| |||||||| ||||| || Sbjct 29879 CGAGTACTCGATTCTGCTCAACGACAAGTACAGTCTAGACGGGCGCGATCCCAACGGCTA 29938 Query 71857 TGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGT 71916 ||| || ||||||||| |||| | || | ||||| | ||| || ||| | Sbjct 29939 TGTGGGCTGCATGTGGTCCATTGGGGGCATACACGACATGGGCTGGAAGGAGCGTGCGAT 29998 Query 71917 GTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTGAA 71973 ||||| || |||||||| ||||| | | || ||| | ||||||||| | ||||| Sbjct 29999 ATTTGGAAAGATTCGCTACATGAACTATCAAGGATGCAAGCGCAAGTTCGACGTGAA 30055 >seq328 Length=165906 Score = 116 bits (128), Expect = 4e-21 Identities = 335/510 (66%), Gaps = 9/510 (2%) Strand=Plus/Minus Query 147449 ATGCTGATTGACCACTTGATACTCGCCCGACAGAACTC--TTCGTACGTACAAATTACTA 147506 ||| ||||||||||||||| | || || || | |||| ||||| || | |||| | Sbjct 107067 ATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTA--TATATATTAGTT 107010 Query 147507 GTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566 ||| | || ||||| || ||||| ||||| | ||| || ||||| | ||| || ||||| Sbjct 107009 GTATATGGTTCGAATGATTCGTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATA 106950 Query 147567 TAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCC 147626 ||| | || || ||||| | | ||||| | || ||| || || | | | Sbjct 106949 GGAGCTACTAACAACGAATTCCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGC 106890 Query 147627 CAGTTCCA-AAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACA 147685 || | ||| ||| || || || ||| ||| ||||| |||| | |||| || ||| Sbjct 106889 CAATCCCATAAGTTCGTTGGA---GTT-TTATCCCACATATCATATTGTAGAATGCCATT 106834 Query 147686 ACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACT 147745 ||| |||| ||||| | || | ||||| | || | || || ||||| ||| Sbjct 106833 GCTTACAGGACTTCCTTTATAGGTTTCGTACGGACCAAATATTTGAGAAAGTTCACAACT 106774 Query 147746 TTGACTTAGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTC 147805 || || ||| ||||||||||||| | || | || |||||| ||||| || Sbjct 106773 AGCTTCTAAAGCCCCAAAATAAATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTC 106714 Query 147806 TTGGCTGTCGTAGGGCATATCCAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGAT 147865 || || || ||||| | | || | || | || || | ||||||| ||| || Sbjct 106713 TTCACTTTCATAGGGAAAACGCATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTAT 106654 Query 147866 ACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAA 147925 ||| || || || || || ||||| ||| | ||| | ||| || ||| | || | Sbjct 106653 ACCAATTGGACGATGCCTTAAATTGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGAT 106594 Query 147926 GTCGATAATTTTATTGAGATTATTGGTAAC 147955 ||| || |||||||| ||||| || | ||| Sbjct 106593 GTCTATTATTTTATTAAGATTTTTAGCAAC 106564 >seq234 Length=227530 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | |||||| |||||| ||||||||||| || ||||| |||||| Sbjct 10075 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 10016 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || ||||||||| | ||||||| ||| | || |||||| Sbjct 10015 CAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTGATTATAAC 9956 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || | ||| |||| ||| | ||| | || || Sbjct 9955 ATTCAGAAGGAGTCCACCTTGCATTTGGTACTGCGGCTTCGTGGTGG 9909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478650822353200