Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq252 172 5e-38
seq328 116 4e-21
seq234 86.0 6e-12
>seq252
Length=176535
Score = 172 bits (190), Expect = 5e-38
Identities = 218/297 (73%), Gaps = 2/297 (1%)
Strand=Plus/Plus
Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTAC-GCAATGAGGGTAAAATTCACGGATA 71736
||||| || ||||| | || |||| || || || | ||||| || || |||||||
Sbjct 29760 GATGACCTGTGGAACTCGGCCCAGCTGCAACTGGTGCGA-GAGGGCAAGATGCACGGATT 29818
Query 71737 CCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCT 71796
|| ||||||||||||||||| ||||| ||||||||||| || || || ||||||||
Sbjct 29819 TCTGCGCATGTACTGGGCCAAGAAGATACTCGAGTGGACGGCCACGCCGGAACAGGCGCT 29878
Query 71797 CGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTA 71856
|||||| || ||| || ||||| | |||||||| ||||| |||||||| ||||| ||
Sbjct 29879 CGAGTACTCGATTCTGCTCAACGACAAGTACAGTCTAGACGGGCGCGATCCCAACGGCTA 29938
Query 71857 TGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGT 71916
||| || ||||||||| |||| | || | ||||| | ||| || ||| |
Sbjct 29939 TGTGGGCTGCATGTGGTCCATTGGGGGCATACACGACATGGGCTGGAAGGAGCGTGCGAT 29998
Query 71917 GTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTGAA 71973
||||| || |||||||| ||||| | | || ||| | ||||||||| | |||||
Sbjct 29999 ATTTGGAAAGATTCGCTACATGAACTATCAAGGATGCAAGCGCAAGTTCGACGTGAA 30055
>seq328
Length=165906
Score = 116 bits (128), Expect = 4e-21
Identities = 335/510 (66%), Gaps = 9/510 (2%)
Strand=Plus/Minus
Query 147449 ATGCTGATTGACCACTTGATACTCGCCCGACAGAACTC--TTCGTACGTACAAATTACTA 147506
||| ||||||||||||||| | || || || | |||| ||||| || | |||| |
Sbjct 107067 ATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTA--TATATATTAGTT 107010
Query 147507 GTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566
||| | || ||||| || ||||| ||||| | ||| || ||||| | ||| || |||||
Sbjct 107009 GTATATGGTTCGAATGATTCGTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATA 106950
Query 147567 TAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCC 147626
||| | || || ||||| | | ||||| | || ||| || || | | |
Sbjct 106949 GGAGCTACTAACAACGAATTCCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGC 106890
Query 147627 CAGTTCCA-AAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACA 147685
|| | ||| ||| || || || ||| ||| ||||| |||| | |||| || |||
Sbjct 106889 CAATCCCATAAGTTCGTTGGA---GTT-TTATCCCACATATCATATTGTAGAATGCCATT 106834
Query 147686 ACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACT 147745
||| |||| ||||| | || | ||||| | || | || || ||||| |||
Sbjct 106833 GCTTACAGGACTTCCTTTATAGGTTTCGTACGGACCAAATATTTGAGAAAGTTCACAACT 106774
Query 147746 TTGACTTAGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTC 147805
|| || ||| ||||||||||||| | || | || |||||| ||||| ||
Sbjct 106773 AGCTTCTAAAGCCCCAAAATAAATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTC 106714
Query 147806 TTGGCTGTCGTAGGGCATATCCAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGAT 147865
|| || || ||||| | | || | || | || || | ||||||| ||| ||
Sbjct 106713 TTCACTTTCATAGGGAAAACGCATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTAT 106654
Query 147866 ACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAA 147925
||| || || || || || ||||| ||| | ||| | ||| || ||| | || |
Sbjct 106653 ACCAATTGGACGATGCCTTAAATTGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGAT 106594
Query 147926 GTCGATAATTTTATTGAGATTATTGGTAAC 147955
||| || |||||||| ||||| || | |||
Sbjct 106593 GTCTATTATTTTATTAAGATTTTTAGCAAC 106564
>seq234
Length=227530
Score = 86.0 bits (94), Expect = 6e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| |||||||| | |||||| |||||| ||||||||||| || ||||| ||||||
Sbjct 10075 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 10016
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | | || | || ||||||||| | ||||||| ||| | || ||||||
Sbjct 10015 CAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTGATTATAAC 9956
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||| || || || || | ||| |||| ||| | ||| | || ||
Sbjct 9955 ATTCAGAAGGAGTCCACCTTGCATTTGGTACTGCGGCTTCGTGGTGG 9909
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478650822353200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |