Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq328 221 3e-52
>seq328
Length=165906
Score = 221 bits (244), Expect = 3e-52
Identities = 736/1139 (65%), Gaps = 7/1139 (1%)
Strand=Plus/Plus
Query 363357 TATCAATTATGAGAAGGATCTCGAGTATGA-TATTTTCGGATATAAGACGATGGAGAAAT 363415
||| | |||||| ||| ||| ||| | |||||| |||| ||||||| | ||| |
Sbjct 105549 TATTATTTATGATCGTGATTTCGGTTATAACTATTTT-GGATTTAAGACGCTCGAGCGTT 105607
Query 363416 CCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTG 363475
|||| || | || ||||| | |||| || || || || || ||| ||||||| |
Sbjct 105608 CCTATTTACTTAAAATAAATGGGAAAATTGCAGAGCGTCCACAACACATGCTAATGCGCG 105667
Query 363476 TTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAA 363535
| ||| ||||||| ||| | ||| ||| ||| || ||||||| || || || ||
Sbjct 105668 TCGCTCTTGGTATTCATGGAGACGATATTGGTGCAGCTGTTGAAACTTACAACCTACTTT 105727
Query 363536 GTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCAC 363595
| || || ||||| ||| ||||||| | | ||||| || | || |
Sbjct 105728 CAGAGCGATATTTTACGCATGCCTCGCCAACTCTTTTTGCTGCTGCTACAAATCGCCCTC 105787
Query 363596 AGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA 363655
| | || || || |||||| | | |||||| ||||| || || ||||| ||| |
Sbjct 105788 AACTATCCTCATGTTTTCTTTTGACAATGAATTCGGATTCAATTGAAGGTATTTTTAAAT 105847
Query 363656 CACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACA 363715
|| || | | ||||| | |||||||| || || |||||||| | | ||
Sbjct 105848 CAGTTGAACAATGTGCAATGATTTCCAAATCAGCGGGTGGAATTGGACTTAATGTTCATT 105907
Query 363716 ATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTT 363774
| ||||||| | || || ||| | || || || |||| | ||||| | |||
Sbjct 105908 GTATTCGTGCCAAAGGCACTTCCATATGTGGAACGAACGG-TACTTCAAATGGATTAGTT 105966
Query 363775 CCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGC 363834
|| ||||| | || ||| | ||| || | || || || ||||| || ||||| |
Sbjct 105967 CCAATGCTAAGAGTATTTAATAATGTGGCACGATATGTTGATCAGGGAGGTGGAAAAAGA 106026
Query 363835 AAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAG 363894
|| || |||||||| ||| | ||||| ||| | ||| ||||||| ||| | ||
Sbjct 106027 CCTGGTGCCTTTGCTATTTATTTAGAGCCCTGGCATTCAGATGTTTTTGAATTTTTAGAC 106086
Query 363895 CTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGG 363954
||| | |||||| |||||||| ||| || ||||| ||||| || ||||| | |||
Sbjct 106087 CTCAAAAGAAACACTGGAAAAGAAGAAAACCGAGCACGGGATCTTTTTTATGCTTTATGG 106146
Query 363955 GTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCA 364014
|| | || | ||| ||||| || || || ||| | | || ||||| | | || |||
Sbjct 106147 ATTCCCGATCTTTTCATGAAACGGGTTGAAGCAAATGAAAACTGGTCGTTGATGTGTCCA 106206
Query 364015 CACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074
|| ||||||| || ||| ||||| ||||| || | | || || || | ||
Sbjct 106207 CATAAATGTCCTGGACTTCAAGATGTTTGGGGCGAAAAATTTGAGCAACTTTATGTCAAA 106266
Query 364075 TATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATC 364134
||||| |||||| ||| | ||| | || ||| | |||||||||||||
Sbjct 106267 TATGAGCAAGAGGGACGTGCTAATCGAACAGTGAAAGCTCAGTCGTTATGGTTTGCCATT 106326
Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194
|| || ||||| |||| || || | || || ||| | | || ||||| || || |
Sbjct 106327 ATAGAATCGCAAGTTGAAACTGGTAACCCATACATGCTTTTTAAGGATTCCTGTAATAGA 106386
Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATT 364254
||| ||| || || | |||| || ||| | || || ||||||| || ||| ||
Sbjct 106387 AAGAGCAATCAACAAAATGTTGGCACTATTAAATGCAGTAATTTATGTACAGAAATTGTT 106446
Query 364255 GAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCG 364314
|| ||| | || || || |||| || || || || | || || || || ||| |
Sbjct 106447 GAGTACTCTGCACCTGATGAGATCGCTGTTTGCAATTTAGCTTCAATTGCACTTAACATG 106506
Query 364315 TTTGTAA---AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT 364371
||||||| ||| || ||||| | | | | | || |||||| | || |
Sbjct 106507 TTTGTAACACCAGAAAAAACATTTGATTTCAAAAAATTAAAAGATGTAACCAAAACTGTT 106566
Query 364372 ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT 364431
|| ||||| | || | || |||| || ||||| || | || ||||| ||
Sbjct 106567 GCTAAAAATCTTAATAAAATAATAGACATCAACTATTACCCCTTGCCAGAAGCTAAGAAA 106626
Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490
|| ||| | | ||||| || |||||| | ||||| || || ||||||||| ||| ||
Sbjct 106627 TCCAATTTAAGGCATCGTCCAATTGGTATAGGTGTTCAAGGTTTCGCTGACGCTTTAAT 106685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303321287013170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |