Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq328 221 3e-52 >seq328 Length=165906 Score = 221 bits (244), Expect = 3e-52 Identities = 736/1139 (65%), Gaps = 7/1139 (1%) Strand=Plus/Plus Query 363357 TATCAATTATGAGAAGGATCTCGAGTATGA-TATTTTCGGATATAAGACGATGGAGAAAT 363415 ||| | |||||| ||| ||| ||| | |||||| |||| ||||||| | ||| | Sbjct 105549 TATTATTTATGATCGTGATTTCGGTTATAACTATTTT-GGATTTAAGACGCTCGAGCGTT 105607 Query 363416 CCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTG 363475 |||| || | || ||||| | |||| || || || || || ||| ||||||| | Sbjct 105608 CCTATTTACTTAAAATAAATGGGAAAATTGCAGAGCGTCCACAACACATGCTAATGCGCG 105667 Query 363476 TTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAA 363535 | ||| ||||||| ||| | ||| ||| ||| || ||||||| || || || || Sbjct 105668 TCGCTCTTGGTATTCATGGAGACGATATTGGTGCAGCTGTTGAAACTTACAACCTACTTT 105727 Query 363536 GTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCAC 363595 | || || ||||| ||| ||||||| | | ||||| || | || | Sbjct 105728 CAGAGCGATATTTTACGCATGCCTCGCCAACTCTTTTTGCTGCTGCTACAAATCGCCCTC 105787 Query 363596 AGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA 363655 | | || || || |||||| | | |||||| ||||| || || ||||| ||| | Sbjct 105788 AACTATCCTCATGTTTTCTTTTGACAATGAATTCGGATTCAATTGAAGGTATTTTTAAAT 105847 Query 363656 CACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACA 363715 || || | | ||||| | |||||||| || || |||||||| | | || Sbjct 105848 CAGTTGAACAATGTGCAATGATTTCCAAATCAGCGGGTGGAATTGGACTTAATGTTCATT 105907 Query 363716 ATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTT 363774 | ||||||| | || || ||| | || || || |||| | ||||| | ||| Sbjct 105908 GTATTCGTGCCAAAGGCACTTCCATATGTGGAACGAACGG-TACTTCAAATGGATTAGTT 105966 Query 363775 CCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGC 363834 || ||||| | || ||| | ||| || | || || || ||||| || ||||| | Sbjct 105967 CCAATGCTAAGAGTATTTAATAATGTGGCACGATATGTTGATCAGGGAGGTGGAAAAAGA 106026 Query 363835 AAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAG 363894 || || |||||||| ||| | ||||| ||| | ||| ||||||| ||| | || Sbjct 106027 CCTGGTGCCTTTGCTATTTATTTAGAGCCCTGGCATTCAGATGTTTTTGAATTTTTAGAC 106086 Query 363895 CTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGG 363954 ||| | |||||| |||||||| ||| || ||||| ||||| || ||||| | ||| Sbjct 106087 CTCAAAAGAAACACTGGAAAAGAAGAAAACCGAGCACGGGATCTTTTTTATGCTTTATGG 106146 Query 363955 GTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCA 364014 || | || | ||| ||||| || || || ||| | | || ||||| | | || ||| Sbjct 106147 ATTCCCGATCTTTTCATGAAACGGGTTGAAGCAAATGAAAACTGGTCGTTGATGTGTCCA 106206 Query 364015 CACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074 || ||||||| || ||| ||||| ||||| || | | || || || | || Sbjct 106207 CATAAATGTCCTGGACTTCAAGATGTTTGGGGCGAAAAATTTGAGCAACTTTATGTCAAA 106266 Query 364075 TATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATC 364134 ||||| |||||| ||| | ||| | || ||| | ||||||||||||| Sbjct 106267 TATGAGCAAGAGGGACGTGCTAATCGAACAGTGAAAGCTCAGTCGTTATGGTTTGCCATT 106326 Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194 || || ||||| |||| || || | || || ||| | | || ||||| || || | Sbjct 106327 ATAGAATCGCAAGTTGAAACTGGTAACCCATACATGCTTTTTAAGGATTCCTGTAATAGA 106386 Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATT 364254 ||| ||| || || | |||| || ||| | || || ||||||| || ||| || Sbjct 106387 AAGAGCAATCAACAAAATGTTGGCACTATTAAATGCAGTAATTTATGTACAGAAATTGTT 106446 Query 364255 GAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCG 364314 || ||| | || || || |||| || || || || | || || || || ||| | Sbjct 106447 GAGTACTCTGCACCTGATGAGATCGCTGTTTGCAATTTAGCTTCAATTGCACTTAACATG 106506 Query 364315 TTTGTAA---AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT 364371 ||||||| ||| || ||||| | | | | | || |||||| | || | Sbjct 106507 TTTGTAACACCAGAAAAAACATTTGATTTCAAAAAATTAAAAGATGTAACCAAAACTGTT 106566 Query 364372 ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT 364431 || ||||| | || | || |||| || ||||| || | || ||||| || Sbjct 106567 GCTAAAAATCTTAATAAAATAATAGACATCAACTATTACCCCTTGCCAGAAGCTAAGAAA 106626 Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 || ||| | | ||||| || |||||| | ||||| || || ||||||||| ||| || Sbjct 106627 TCCAATTTAAGGCATCGTCCAATTGGTATAGGTGTTCAAGGTTTCGCTGACGCTTTAAT 106685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303321287013170