Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq26 86.0 2e-12 seq39 84.2 5e-12 >seq26 Length=998041 Score = 86.0 bits (94), Expect = 2e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 27929 CACGATATGCGCCGTACAGCCAGTACGTTGTTGCATGAGGCTGGTTATCCTTCAGACTGG 27988 || ||| ||||| | || || || || || |||| ||||| |||||| | | || ||| Sbjct 160651 CATGATTTGCGCAGGACGGCAAGCACTCTGCTGCACGAGGCAGGTTATAATACTGATTGG 160710 Query 27989 ATTGAAAAGGCTCTGGCACATGAGCAGAAAGGTGTGCGCGCCGTATATAACAAAGCGGAA 28048 || || ||| || || ||||||||||||||||| | || || ||||| || || ||| Sbjct 160711 ATCGAGAAGTGCCTTGCCCATGAGCAGAAAGGTGTAAGAGCTGTTTATAATAAGGCCGAA 160770 Query 28049 TA-CGCCAGACAGCGCGCCTACATGTTGCAGCAGTGGTCCGATATGATTGA 28098 || || | |||||| || ||| | || | ||| | ||||||||||| Sbjct 160771 TATCGTGA-CCAGCGCACCGCTATGCTTCAAGACTGGGCTGATATGATTGA 160820 Score = 84.2 bits (92), Expect = 5e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2853 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 2912 ||||| | | ||| ||||||||||| ||| || || ||||||||||| |||||||| ||| Sbjct 454424 TGGCGCGCCCTGCTGGATTCGAACCAGCGGCCCACAGCTTAGAAGGCTGTTGCTCTATCC 454365 Query 2913 AACTGAGCTAA 2923 ||||||||||| Sbjct 454364 AACTGAGCTAA 454354 >seq39 Length=736423 Score = 84.2 bits (92), Expect = 5e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2853 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 2912 ||||| | | ||| ||||||||||| ||| || || ||||||||||| |||||||| ||| Sbjct 89891 TGGCGCGCCCTGCTGGATTCGAACCAGCGGCCCACAGCTTAGAAGGCTGTTGCTCTATCC 89832 Query 2913 AACTGAGCTAA 2923 ||||||||||| Sbjct 89831 AACTGAGCTAA 89821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125008327477020