Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq23 113 4e-20 seq6 98.7 8e-16 seq35 93.3 3e-14 >seq23 Length=1278451 Score = 113 bits (124), Expect = 4e-20 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || ||||||||||| || ||||||||||| | Sbjct 1264091 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1264150 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||| || | || || ||||| ||||| || Sbjct 1264151 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1264210 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| ||||| Sbjct 1264211 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGGATGGCTCAA 1264268 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941 |||| |||||||||||| || |||| ||||| ||||| |||||||||||||| Sbjct 1264269 CCTCCAAGGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTA 1264323 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || ||||||||||| || ||||||||||| | Sbjct 1263407 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263466 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||| || | || || ||||| ||||| || Sbjct 1263467 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263526 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| ||||| Sbjct 1263527 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGGATGGCTCAA 1263584 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| |||||||| || || ||||| |||||||| Sbjct 1263585 CCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || ||||||||||| || ||||||||||| | Sbjct 1263635 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263694 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||| || | || || ||||| ||||| || Sbjct 1263695 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263754 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| ||||| Sbjct 1263755 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGGATGGCTCAA 1263812 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| |||||||| || || ||||| |||||||| Sbjct 1263813 CCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || ||||||||||| || ||||||||||| | Sbjct 1263863 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263922 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||| || | || || ||||| ||||| || Sbjct 1263923 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263982 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| ||||| Sbjct 1263983 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGGATGGCTCAA 1264040 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| |||||||| || || ||||| |||||||| Sbjct 1264041 CCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || || |||||||| || ||||||||||| | Sbjct 1263179 CCACCGCGGAGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAA 1263238 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||| || | || || ||||| ||||| || Sbjct 1263239 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263298 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| ||||| Sbjct 1263299 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGGATGGCTCAA 1263356 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| |||||||| || || ||||| |||||||| Sbjct 1263357 CCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405 >seq6 Length=3104374 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || | | ||| Sbjct 2898465 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 2898406 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| || || || | |||||| ||||| Sbjct 2898405 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 2898346 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 2898345 TGGATCTTAGC--CTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGG 2898288 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || || || ||||| |||||||| |||||||| Sbjct 2898287 TCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATTTT 2898251 >seq35 Length=832945 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| ||||| || |||||||| || ||||||||||||| | Sbjct 773423 CCACCGCGAAGACGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 773482 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || ||||| ||| | || | ||||| || || || Sbjct 773483 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGA 773542 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| |||||| Sbjct 773543 ATGCCCTCCTTGTCCTGGATCTTAGC--CTTGACATTCTCGATGGTGTCCGAGGGCTCGA 773600 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || || || || |||||||| Sbjct 773601 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || ||||| Sbjct 773666 AGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCC 773725 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || |||| | ||||| || || || | |||||| ||||| Sbjct 773726 TCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 773785 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| || | |||||||| Sbjct 773786 TGGATCTTAGC--CTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGG 773843 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 773844 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || ||||| Sbjct 773894 AGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCC 773953 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || |||| | ||||| || || || | |||||| ||||| Sbjct 773954 TCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 774013 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| || | |||||||| Sbjct 774014 TGGATCTTAGC--CTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGG 774071 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 774072 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 774105 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || ||||| Sbjct 774122 AGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCC 774181 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || |||| | ||||| || || || | |||||| ||||| Sbjct 774182 TCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 774241 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| || | ||| |||| Sbjct 774242 TGGATCTTAGC--CTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGG 774299 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || ||||| || || || || |||||||| ||| Sbjct 774300 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTTG 774337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405078446885650