Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq23 113 3e-20 seq1911 104 2e-17 seq303 102 5e-17 seq234 100 2e-16 seq35 100 2e-16 seq491 98.7 7e-16 >seq23 Length=1278451 Score = 113 bits (124), Expect = 3e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||| ||||||||| |||||| |||||| || || ||||| |||| Sbjct 1264089 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1264148 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || || | || || ||||| || || || || || || || | || Sbjct 1264149 AAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 1264208 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || |||||| |||| | || || |||| Sbjct 1264209 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAA 1264268 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || || || || ||||| || |||||||||||||| || |||||||| || || Sbjct 1264269 CCTCCAAGGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTA 1264323 >seq1911 Length=1087 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 547 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 488 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 487 GCCAATATTTAGCTTTA 471 >seq303 Length=142959 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | ||||| || |||| |||| | || ||||| || || ||||||||| Sbjct 32669 ATGGCCACCGTCAACGTTAACCGTAGTGTGACAGATATCTTCTATCGTTATAAAATGCCG 32610 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||| | || || || || || || || ||||| || ||||| || | || || ||| Sbjct 32609 CGCCTTCAAGCAAAAGTAGAAGGAAAAGGCAACGGCATCAAAACTGTTTTGGTTAATATG 32550 Query 6282 CCTGAAGTCGCTAAGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 ||||||| || | |||| | || || || |||||||| ||||| || || || || | Sbjct 32549 GCTGAAGTTGC--ACGCGCTATTGGCCGTCCGGCCACCTATCCGACAAAGTACTTTGGCT 32492 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | || || ||||| || |||| || ||||| || Sbjct 32491 GTGAGCTGGGCGCCCAAACGCTTTTCGATCATAA 32458 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || || || || || ||||| ||||||||| || |||||| ||||| || | || Sbjct 28374 AATGAACGGTTTATTGTTAATGGATCGCATGACGTGAACAAGCTTCAGGATTTGTTGGAT 28315 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 ||||| ||||| |||||||| |||| | |||||||||||||| || || | || | Sbjct 28314 GGCTTCATTCGAAAGTTTGTTTTGTGCCCCGAATGCGATAACCCAGAAACTAATCTGACC 28255 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || | |||| | || ||||| ||| ||||| || ||||| | |||||| | Sbjct 28254 GTATCAGCTAAGAACCAGACAATCTCGCAGTCTTGCAAGGCATGCGGCTTCCATGGTCTG 28195 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 || | | |||||| | ||||| || || |||| ||||| ||| Sbjct 28194 CTTAAGGTGAACCACAAAGTGAACACATTTATTGTGAAAAATCCACCA 28147 >seq234 Length=227530 Score = 100 bits (110), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||| |||||||| | ||| |||||| ||||| || |||||||| | || | Sbjct 9921 CGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGATAGTGTTCGGCCA 9980 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || |||||||| || || || || | |||||||||||| | || | ||||||||| Sbjct 9981 TCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCTTTG 10040 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAAT 38281 ||| ||| || || ||||| | || ||||| | || ||| || || | || || Sbjct 10041 TCCTGAATCTTGGCTTTGACATTTTCGATGGTATC-CGACGGTTCGACCTCAAGAGTTAT 10099 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 || || ||||| | ||| || || || ||||||||| |||| Sbjct 10100 GGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCATGGTTTA 10141 >seq35 Length=832945 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || || | ||||||||| | ||| |||||| || || ||||| || ||| Sbjct 774107 CCACCGCGCAGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 774166 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| |||| |||| || | || || ||||| || || | || || ||||| | ||| Sbjct 774167 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 774226 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||| ||||||| || || || || || Sbjct 774227 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 774286 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||| ||| |||||||| ||||||||||| Sbjct 774287 TCGAGGGTTATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 774336 >seq491 Length=72148 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 9930 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 9989 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 9990 GGTTATATTTAG 10001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939301002985