Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq328 574 6e-159 seq111 141 1e-28 >seq328 Length=165906 Score = 574 bits (636), Expect = 6e-159 Identities = 1265/1879 (67%), Gaps = 28/1879 (1%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||| | ||| ||||| || | | || || ||||| || |||| ||| |||||||| Sbjct 107408 TTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCG 107349 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 |||||||| || |||| | ||||||| || || | ||| || | || Sbjct 107348 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGC 107289 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || || | ||| | ||| | || ||||||||||| || || || || || || |||||| Sbjct 107288 TCGGCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCC 107229 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62079 || || || | | || || ||||||||| | |||||||||| |||| || || Sbjct 107228 ATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCG-AACATT 107170 Query 62080 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62136 || |||| |||| |||| |||||||| || | | || || || |||| || || Sbjct 107169 TTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCAT 107110 Query 62137 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62196 ||||||| |||||| | ||| |||||| | || | | ||| |||| || ||||| Sbjct 107109 ATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTG 107050 Query 62197 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 62256 |||||| ||||| ||||||| | || || |||||| | ||||| ||||| | || || Sbjct 107049 AAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTC 106990 Query 62257 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62316 ||||| |||| |||||| ||||| ||||| || |||||||| || || || || ||| Sbjct 106989 GTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATT 106930 Query 62317 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 62376 |||| |||| | || | || | ||||| || || ||||| ||| | | || || Sbjct 106929 CCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAGTTCGTTGG 106870 Query 62377 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATG 62435 ||||||||| || || || | | || |||| ||| | Sbjct 106869 AGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACT-TCCTTTATAGG 106811 Query 62436 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 62495 | ||||| || || | | || ||||||||||| || ||||| || || |||||| Sbjct 106810 TTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATAAA 106751 Query 62496 TGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTA 62555 | ||||| || || | | |||| | ||||| || ||| | ||| || | Sbjct 106750 TAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACGCA 106691 Query 62556 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 ||||| || ||||| || || ||||||||||| ||||| || || | ||| || || Sbjct 106690 TTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAAT 106631 Query 62616 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675 | || | | ||||||||| | || ||||| || || ||||| |||||||| |||||| Sbjct 106630 TGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTT 106571 Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTA 62732 | ||| |||| ||||| || | ||| ||||||||| ||| ||| Sbjct 106570 TAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTTCTGGTGTTA 106511 Query 62733 CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62792 |||||||||| | ||||| || || | ||| ||||| || | ||||| || | | | Sbjct 106510 CAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGT 106451 Query 62793 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 62852 | | | || || || || | |||||| || || || || || | |||||||||||| | Sbjct 106450 ACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGC 106391 Query 62853 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 62912 ||||| | ||||| | ||||||| |||| ||| |||| |||||||||||| || |||| Sbjct 106390 TCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATT 106331 Query 62913 CTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCT 62970 ||||||| || ||| | ||||| |||| || | | | |||| | | || |||| Sbjct 106330 CTATAATGGCAAACCATAACGACT-GAGCTTTCACTGTTCGATTAGCACGTCC---CTCT 106275 Query 62971 TTCGTATAGTGTATACAA--TCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGA 63028 | | ||| | | | || | | || || | || |||||||||| | ||||||||| Sbjct 106274 TGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGA 106215 Query 63029 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAG 63087 |||| || ||||||||||||||||| | | | | | ||||| | |||||||| || || Sbjct 106214 CATTTATGTGGACACATCAACGACCAGTTTTCATT-TGCTTCAACCCGTTTCATGAAAAG 106156 Query 63088 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63147 ||| |||||||| | ||| ||| ||||| | | || | ||| || ||||| || || Sbjct 106155 ATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTCCAGTGTT 106096 Query 63148 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63207 |||| || || | || | | || ||| |||||||| || || || || || || | Sbjct 106095 TCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAA 106036 Query 63208 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63267 | ||||| | ||| ||||||||||| | |||| || |||||| | ||||| Sbjct 106035 GGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAATACTCT 105976 Query 63268 CAACATTGGAA-TAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG 63326 | |||||||| |||| ||||| || ||||| || || || | || | | || ||| Sbjct 105975 TAGCATTGGAACTAAT-CCATTTGAAGTACCGTTCGTTCCACATATGGAAGTGCCTTTGG 105917 Query 63327 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63386 |||||||| | || || || ||||| || || ||| || || | ||| ||| Sbjct 105916 CACGAATACAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCATTGCACATT 105857 Query 63387 GTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAAAAC 63443 ||| | | | | | || || || || ||| || ||| ||| || ||||||| Sbjct 105856 GTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCAT--TGTCAA-AAGAAAAC 105800 Query 63444 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503 | || | ||| | ||| | || | ||| ||| | || || || || || |||| Sbjct 105799 ATGAGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCATGCGTAA 105740 Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63563 | || || |||||||| ||||| || |||| ||||| | ||||| | ||||| Sbjct 105739 AATATCGCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGTCTCCATGAA 105680 Query 63564 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63623 | || | ||||| ||||||| |||||| || || | || | || || ||||||| Sbjct 105679 TACCAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTTCCCATTTATTT 105620 Query 63624 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63683 | | || ||||| || | || ||||| ||||||||||| || || || || | Sbjct 105619 TAAGTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCGAAATCACGAT 105560 Query 63684 CGTAAATAATAACCGAGTT 63702 | ||||||||| | ||||| Sbjct 105559 CATAAATAATAGCAGAGTT 105541 >seq111 Length=362587 Score = 141 bits (156), Expect = 1e-28 Identities = 289/427 (68%), Gaps = 3/427 (1%) Strand=Plus/Plus Query 32664 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 32723 || || |||||||| ||||| ||||| | | || | |||||||| || || || ||| Sbjct 244663 GCAAAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCG 244722 Query 32724 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 32783 ||||| ||||||||||| || |||||||| || || ||||| || ||||| ||| Sbjct 244723 GGCATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATT 244782 Query 32784 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATC 32840 ||||| || || ||||||||||||| | ||| || | || || | || | |||| Sbjct 244783 CCTTCCACGGCTGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 244842 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 32900 || | ||||| || ||||| |||||| ||||| ||||| | |||||| || Sbjct 244843 CAGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGAAC 244902 Query 32901 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 32960 | |||| || || || | || || ||||| | | || ||||| || Sbjct 244903 AAGTAGTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 244962 Query 32961 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGT 33020 || || | ||| || ||||| || || || ||||||||||| | ||||| || ||||| Sbjct 244963 GAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGATCTGC 245022 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 || || || || || || | | ||| || || || || || || ||| || || Sbjct 245023 ACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGAAG 245082 Query 33081 AACGCCA 33087 || |||| Sbjct 245083 AAGGCCA 245089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616674026000