Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq252 118 9e-22 seq234 104 2e-17 seq35 84.2 2e-11 >seq252 Length=176535 Score = 118 bits (130), Expect = 9e-22 Identities = 206/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041 ||||| ||||| ||||| || || |||||||| || | || | ||||| || Sbjct 30053 CACGTCGAACTTGCGCTTGCATCCTTGATAGTTCATGTAGCGAATCTTTCCAAATATCGC 29994 Query 51042 GCGTTCTTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATT 51101 || || || | | ||||||| | || | ||| |||||||| || |||||||| Sbjct 29993 ACGCTCCTTCCAGCCCATGTCGTGTATGCCCCCAATGGACCACATGCAGCCCACATAGCC 29934 Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161 ||| |||||||| || || | ||||| | ||||| || | || | || | | || Sbjct 29933 GTTGGGATCGCGCCCGTCTAGACTGTACTTGTCGTTGAGCAGAATCGAGTACTCGAGCGC 29874 Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221 | || | | | |||||| || | || |||||||||||||||||||||| | || Sbjct 29873 CTGTTCCGGCGTGGCCGTCCACTCGAGTATCTTCTTGGCCCAGTACATGCGCAGAAATCC 29814 Query 51222 GTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 ||||||||||||||| ||| | || ||| || ||||||||||||| || |||| Sbjct 29813 GTGCATCTTGCCCTCTCGCACC--AGTTGCAGCTGGGCCGAGTTCCACAGGTCATCGT 29758 >seq234 Length=227530 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || ||||||||||| | || || || |||| || | || || || | Sbjct 10139 AACCATGCAGATCTTTGTAAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAACC 10080 Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 ||| || || ||||| |||| |||| || | ||| ||||||||||| ||||| | Sbjct 10079 GTCGGATACCATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTC 10024 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || ||||| || | || || || ||||||||||| ||||||| || || | | Sbjct 10023 CAGATCAACAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTG 9964 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||| || ||||| || || ||||| | ||||| || || |||| Sbjct 9963 ATTATAACATTCAGAAGGAGTCCACCTTGCATTTGGTACTGCGGCT 9918 >seq35 Length=832945 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || || ||| | || Sbjct 773649 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCG 773590 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || ||||| || || || Sbjct 773589 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 773530 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | || ||| || ||| ||||| Sbjct 773529 CAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 773470 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || || || || | ||||| || Sbjct 773469 ATCCAGAAGGAGTCGACTTTGCATTTGGT 773441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317780907025