Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq252 118 9e-22
seq234 104 2e-17
seq35 84.2 2e-11
>seq252
Length=176535
Score = 118 bits (130), Expect = 9e-22
Identities = 206/298 (69%), Gaps = 4/298 (1%)
Strand=Plus/Minus
Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041
||||| ||||| ||||| || || |||||||| || | || | ||||| ||
Sbjct 30053 CACGTCGAACTTGCGCTTGCATCCTTGATAGTTCATGTAGCGAATCTTTCCAAATATCGC 29994
Query 51042 GCGTTCTTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATT 51101
|| || || | | ||||||| | || | ||| |||||||| || ||||||||
Sbjct 29993 ACGCTCCTTCCAGCCCATGTCGTGTATGCCCCCAATGGACCACATGCAGCCCACATAGCC 29934
Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161
||| |||||||| || || | ||||| | ||||| || | || | || | | ||
Sbjct 29933 GTTGGGATCGCGCCCGTCTAGACTGTACTTGTCGTTGAGCAGAATCGAGTACTCGAGCGC 29874
Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221
| || | | | |||||| || | || |||||||||||||||||||||| | ||
Sbjct 29873 CTGTTCCGGCGTGGCCGTCCACTCGAGTATCTTCTTGGCCCAGTACATGCGCAGAAATCC 29814
Query 51222 GTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277
||||||||||||||| ||| | || ||| || ||||||||||||| || ||||
Sbjct 29813 GTGCATCTTGCCCTCTCGCACC--AGTTGCAGCTGGGCCGAGTTCCACAGGTCATCGT 29758
>seq234
Length=227530
Score = 104 bits (114), Expect = 2e-17
Identities = 160/226 (71%), Gaps = 8/226 (4%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
||| ||||| || ||||||||||| | || || || |||| || | || || || |
Sbjct 10139 AACCATGCAGATCTTTGTAAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAACC 10080
Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110
||| || || ||||| |||| |||| || | ||| ||||||||||| ||||| |
Sbjct 10079 GTCGGATACCATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTC 10024
Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170
| || ||||| || | || || || ||||||||||| ||||||| || || | |
Sbjct 10023 CAGATCAACAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTG 9964
Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||| || ||||| || || ||||| | ||||| || || ||||
Sbjct 9963 ATTATAACATTCAGAAGGAGTCCACCTTGCATTTGGTACTGCGGCT 9918
>seq35
Length=832945
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || ||||||| | || || ||| | ||
Sbjct 773649 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCG 773590
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| ||||| || || ||||| || || ||
Sbjct 773589 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 773530
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||||||||| || | || || | || ||| || ||| |||||
Sbjct 773529 CAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 773470
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207
|| || || || || || | ||||| ||
Sbjct 773469 ATCCAGAAGGAGTCGACTTTGCATTTGGT 773441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433317780907025
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |