Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq76 96.9 4e-15 seq51 96.9 4e-15 >seq76 Length=474712 Score = 96.9 bits (106), Expect = 4e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 38460 AAGCAGACGCCGCAACAGTTGGCCGAGGCCGGCTTCTACTATTCGGGCACCGGAGACCAG 38519 ||||||| ||| ||| | |||||||| || |||| |||| ||||| ||| |||| Sbjct 365174 AAGCAGAAGCCAATGCAGCTCGCCGAGGCGGGTTTCTTCTATACGGGCGTCGGCGACCGC 365115 Query 38520 GTCAAATGTTTCTTTTGCGGCGGCGGCCTTAAGGACTGGGA-GCCTGCGGACGATCCGTG 38578 ||| |||||| |||||||||||| || ||||||||||| | | | ||||| || || Sbjct 365114 GTCCGCTGTTTCAGTTGCGGCGGCGGTCTCAAGGACTGGGACGACAAC-GACGAGCCCTG 365056 Query 38579 GGCGCAGCACGCGCGCTGGTTC 38600 || ||||||||| | |||| || Sbjct 365055 GGAGCAGCACGCTCTCTGGCTC 365034 >seq51 Length=625475 Score = 96.9 bits (106), Expect = 4e-15 Identities = 221/331 (67%), Gaps = 9/331 (3%) Strand=Plus/Plus Query 127542 TGCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGG 127601 |||| || || || ||||||||||||||||||| | ||||| |||| |||| | || Sbjct 71258 TGCATGGATTCCATGTGCACGAGTTCGGCGACAACACCAACGGCTGCATGTCGTCCGGCC 71317 Query 127602 AACACTTCAATCCCACCGGTATGGATCACGGAGCGCCCA---ACGCGCTCGTTCGTCACG 127658 |||||||||||| | | | ||| ||||| || |||| ||| | | || ||| Sbjct 71318 CCCACTTCAATCCCCGCAGCAAGGAGCACGGTGCCCCCACCGACGAGAAC---CGCCACT 71374 Query 127659 TTGGCGACCTGGGCAACGTGGAGGCGGCTAGCAGCAATTCTTTGACCGAAGTCAACATCA 127718 | |||||| |||||||| | ||||||| || || | || | |||| ||||| Sbjct 71375 TGGGCGACTTGGGCAACATTCAGGCGGCCGGCGACAGCCC---CACGGCTGTCAGCATCA 71431 Query 127719 TCGACCACGTCATGTCTCTGTACGGACCGAACAGCGTCATCGGTAGGAGTCTGGTCGTGC 127778 |||| || |||| | ||| | ||||| |||| || | | ||||||| | Sbjct 71432 CCGACTCAAAGATCACTCTTTTCGGTGCCGACAGCATCATTGGACGCACCGTGGTCGTCC 71491 Query 127779 ACACGGATCGTGACGATCTCGGCCTGACCGATCATTATTTGAGCAAAACCACCGGCAACT 127838 || | ||| ||| || | ||| | | || | ||||||| ||||||||||| Sbjct 71492 ACGCCGATGCTGATGACTTGGGCAAGGGTGGCCACGAGCTGAGCAAGACCACCGGCAATG 71551 Query 127839 CGGGCGGTCGGTTGGGGTGCGGGATCATTGG 127869 | |||| || | || ||||| ||||||| Sbjct 71552 CCGGCGCCCGTATTGGCTGCGGTGTCATTGG 71582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537590196722600