Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_008348.1
Length=168041
Score E
Sequences producing significant alignments: (Bits) Value
seq76 96.9 4e-15
seq51 96.9 4e-15
>seq76
Length=474712
Score = 96.9 bits (106), Expect = 4e-15
Identities = 108/142 (76%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 38460 AAGCAGACGCCGCAACAGTTGGCCGAGGCCGGCTTCTACTATTCGGGCACCGGAGACCAG 38519
||||||| ||| ||| | |||||||| || |||| |||| ||||| ||| ||||
Sbjct 365174 AAGCAGAAGCCAATGCAGCTCGCCGAGGCGGGTTTCTTCTATACGGGCGTCGGCGACCGC 365115
Query 38520 GTCAAATGTTTCTTTTGCGGCGGCGGCCTTAAGGACTGGGA-GCCTGCGGACGATCCGTG 38578
||| |||||| |||||||||||| || ||||||||||| | | | ||||| || ||
Sbjct 365114 GTCCGCTGTTTCAGTTGCGGCGGCGGTCTCAAGGACTGGGACGACAAC-GACGAGCCCTG 365056
Query 38579 GGCGCAGCACGCGCGCTGGTTC 38600
|| ||||||||| | |||| ||
Sbjct 365055 GGAGCAGCACGCTCTCTGGCTC 365034
>seq51
Length=625475
Score = 96.9 bits (106), Expect = 4e-15
Identities = 221/331 (67%), Gaps = 9/331 (3%)
Strand=Plus/Plus
Query 127542 TGCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGG 127601
|||| || || || ||||||||||||||||||| | ||||| |||| |||| | ||
Sbjct 71258 TGCATGGATTCCATGTGCACGAGTTCGGCGACAACACCAACGGCTGCATGTCGTCCGGCC 71317
Query 127602 AACACTTCAATCCCACCGGTATGGATCACGGAGCGCCCA---ACGCGCTCGTTCGTCACG 127658
|||||||||||| | | | ||| ||||| || |||| ||| | | || |||
Sbjct 71318 CCCACTTCAATCCCCGCAGCAAGGAGCACGGTGCCCCCACCGACGAGAAC---CGCCACT 71374
Query 127659 TTGGCGACCTGGGCAACGTGGAGGCGGCTAGCAGCAATTCTTTGACCGAAGTCAACATCA 127718
| |||||| |||||||| | ||||||| || || | || | |||| |||||
Sbjct 71375 TGGGCGACTTGGGCAACATTCAGGCGGCCGGCGACAGCCC---CACGGCTGTCAGCATCA 71431
Query 127719 TCGACCACGTCATGTCTCTGTACGGACCGAACAGCGTCATCGGTAGGAGTCTGGTCGTGC 127778
|||| || |||| | ||| | ||||| |||| || | | ||||||| |
Sbjct 71432 CCGACTCAAAGATCACTCTTTTCGGTGCCGACAGCATCATTGGACGCACCGTGGTCGTCC 71491
Query 127779 ACACGGATCGTGACGATCTCGGCCTGACCGATCATTATTTGAGCAAAACCACCGGCAACT 127838
|| | ||| ||| || | ||| | | || | ||||||| |||||||||||
Sbjct 71492 ACGCCGATGCTGATGACTTGGGCAAGGGTGGCCACGAGCTGAGCAAGACCACCGGCAATG 71551
Query 127839 CGGGCGGTCGGTTGGGGTGCGGGATCATTGG 127869
| |||| || | || ||||| |||||||
Sbjct 71552 CCGGCGCCCGTATTGGCTGCGGTGTCATTGG 71582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 537590196722600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |