Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq111 266 4e-66 seq13 116 4e-21 >seq111 Length=362587 Score = 266 bits (294), Expect = 4e-66 Identities = 540/789 (68%), Gaps = 21/789 (3%) Strand=Plus/Plus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 |||||||| || ||||| ||||| || ||||| | || || | | || || ||| Sbjct 244312 TAGAAATCGGCGTCTAGGGTAAACACGTTGTCCAAGCGACTCGTT---ACGACTCC-CAT 244367 Query 92803 TTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||||| || |||| ||||| |||||||| ||||||||||| |||| ||| ||| Sbjct 244368 GCGCTGGTACTCGGCAACCTTTTTCTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCAT 244427 Query 92862 ATTCACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTC---ACCGATCAACTCGTA 92916 || || | ||| |||||||| | ||| || ||| | ||||| | || Sbjct 244428 ATCCATGAAACTGAAGGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGC---TCCAT 244484 Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || | | ||| || |||||||| |||||||| ||||| | | || ||||| || | Sbjct 244485 CAGCAGACGATCGGCGACAAATTCAATGTACTGGGACATGAGGACGCAGTTCATGCCAAT 244544 Query 92977 AAGACGTACAGGT-AGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | | | |||| || || ||||| | ||| |||| ||||||| | || || || | | Sbjct 244545 CAAAT-TGCAGGGCAGGGCTTCGGTGAGGAACTCTTGCTCGATTTCGACAGCATCCCTAA 244603 Query 93036 AGATTTCTATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCA 93093 ||| || || | | || | |||| | || || | || | |||||| | ||| Sbjct 244604 TGATCTCAATAATGCGCTCCCGCTTGG--GACGCTGCACCAGATGCTGGTACATGA-GCA 244660 Query 93094 C-GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAAC 93152 | ||||||||| || | ||||||||| || || |||| ||| ||| ||| || | || Sbjct 244661 CCGCAAAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGAC 244720 Query 93153 CTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTA 93212 | || | || || || ||||| |||||||| || || ||||| || || || || | Sbjct 244721 CGGGCATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGA 244780 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272 | ||||||||||||||||| || | |||||| |||||||| || || || || | | Sbjct 244781 TTCCTTCCACGGCTGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATA 244840 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 |||| | ||||| || || || ||| | | || | || || | ||| || | Sbjct 244841 TCCAGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGA 244900 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | | ||| || ||||| | || || |||||||| || || || | || ||||| | Sbjct 244901 ACAAGTAGTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCT 244960 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 | || || || |||||||| ||||| ||||| |||||||| || | || |||||||||| Sbjct 244961 CGGAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGATCT 245020 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 |||| || ||| || | ||| || ||||| || || || || |||||||| || || | Sbjct 245021 GCACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGA 245080 Query 93513 aaaaaGCCA 93521 | || |||| Sbjct 245081 AGAAGGCCA 245089 >seq13 Length=1606494 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 1103016 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 1102957 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 1102956 GTGGGTTCGAACCCCACACCTGACAA 1102931 Score = 109 bits (120), Expect = 6e-19 Identities = 80/91 (88%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 1105778 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGCG 1105719 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||||||||||| ||||| |||||| Sbjct 1105718 TGGGTTCGAACCCCACATCTGAC--ATTATT 1105690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847330929400