Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_008953.1
Length=3935
Score E
Sequences producing significant alignments: (Bits) Value
seq16 107 5e-20
>seq16
Length=1810876
Score = 107 bits (118), Expect = 5e-20
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393
|| ||| ||| |||||||||| |||| |||||| || |||||||||||||| ||
Sbjct 1151575 CCGATGGCGCGTGTCTTTCCAAAGGTCACCAAATGTACGTTCCACAAATACGGTCCCTCC 1151516
Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453
||| || | || | ||| ||||| ||| | || ||| |||| | ||||| ||||||
Sbjct 1151515 GGCGATGTGCAGAAATTCGACGGACTGTGCGTGCTGCCGTTGAACATTGTCAATGAGAAG 1151456
Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480
|||||| | ||||| ||||||||||||
Sbjct 1151455 ATCTACGTGTTCCTGTGGTTCTGGTTC 1151429
Score = 80.6 bits (88), Expect = 7e-12
Identities = 71/88 (81%), Gaps = 3/88 (3%)
Strand=Plus/Minus
Query 2714 ACAATGTATTCTTCCGGTTGCATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCAT 2773
||||||||||| ||| |||| ||| || ||||||||||||||| ||||| || |||
Sbjct 1152192 ACAATGTATTC---CGGATGCACTACAAGGCCACCGTGATCATCCTGATCGCCTTCTCAC 1152136
Query 2774 TGCTGGTGACTTCGCGGCAGTACTTCGG 2801
|||||||||| || || ||||| ||||
Sbjct 1152135 TGCTGGTGACATCCCGCCAGTATATCGG 1152108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 12479735872500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |