Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq16 107 5e-20 >seq16 Length=1810876 Score = 107 bits (118), Expect = 5e-20 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393 || ||| ||| |||||||||| |||| |||||| || |||||||||||||| || Sbjct 1151575 CCGATGGCGCGTGTCTTTCCAAAGGTCACCAAATGTACGTTCCACAAATACGGTCCCTCC 1151516 Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453 ||| || | || | ||| ||||| ||| | || ||| |||| | ||||| |||||| Sbjct 1151515 GGCGATGTGCAGAAATTCGACGGACTGTGCGTGCTGCCGTTGAACATTGTCAATGAGAAG 1151456 Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||| | ||||| |||||||||||| Sbjct 1151455 ATCTACGTGTTCCTGTGGTTCTGGTTC 1151429 Score = 80.6 bits (88), Expect = 7e-12 Identities = 71/88 (81%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 2714 ACAATGTATTCTTCCGGTTGCATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCAT 2773 ||||||||||| ||| |||| ||| || ||||||||||||||| ||||| || ||| Sbjct 1152192 ACAATGTATTC---CGGATGCACTACAAGGCCACCGTGATCATCCTGATCGCCTTCTCAC 1152136 Query 2774 TGCTGGTGACTTCGCGGCAGTACTTCGG 2801 |||||||||| || || ||||| |||| Sbjct 1152135 TGCTGGTGACATCCCGCCAGTATATCGG 1152108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479735872500