Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq111 253 4e-62 >seq111 Length=362587 Score = 253 bits (280), Expect = 4e-62 Identities = 559/828 (68%), Gaps = 25/828 (3%) Strand=Plus/Minus Query 42329 CTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACT 42388 |||| |||||| | || ||| | || || | |||||| || | | ||||| || Sbjct 245184 CTCCTTCTGGACTGTGGAAGAGGTGGATCTATCGAAGGACGCGACAGACTGGGCCCGTCT 245125 Query 42389 GTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGG 42448 | | || ||||| | ||| || || | |||||||||||||| ||||| || || Sbjct 245124 GACCGACAACGAGCGCTACTTCATCTCCCACGTGCTGGCCTTCTTCGCTGCCTCCGATGG 245065 Query 42449 CATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCG 42508 ||| || || ||||| |||| | | |||| | ||||||||| | |||||||| Sbjct 245064 CATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCGCG 245005 Query 42509 CTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACT 42568 |||||||||||||||||||| ||||| |||||||||||||| ||| |||| || | Sbjct 245004 TTGCTTCTACGGCTTCCAGATTGCCATGGAGAACGTGCACTCCGAGATGTA---CAGCGT 244948 Query 42569 GCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGA 42625 ||||| |||| ||||| | ||| || ||||| || ||||||| || | || Sbjct 244947 GCTCATTGACACCTACATACGGGAGCCGAAGGAGCGCGACTACTTGTTCAATGCTGTTGA 244888 Query 42626 GACGATGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGA-----TCGAGA 42678 ||| ||||| ||| | ||| ||||| |||||||| || ||||| |||| | Sbjct 244887 GACCATGCCGGCTG--TAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATATCCTCGAAA 244830 Query 42679 GTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCT 42738 || | |||| || | |||| | | | |||||| | ||||| || || ||||||| Sbjct 244829 ---TCGGC-CAAC-TTTGCCGAGCGTATTATTGCCTTTGCAGCCGTGGAAGGAATCTTCT 244775 Query 42739 TCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTC 42797 || ||| ||| ||||| ||||| ||||| ||| || || || |||||||| || Sbjct 244774 TCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTC-ATGCCCGGTCTG 244716 Query 42798 ACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTC 42857 |||||||| ||||| || ||| | ||||| || || || | |||||||| ||| Sbjct 244715 ACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACTGCGACTTTGCGGTGCTC 244656 Query 42858 CTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACG 42917 ||| | | || || ||| ||| | |||||| | | ||||| | | Sbjct 244655 ATGTACCAG---CATCTGGTGCAGCGTCCCAAGCGGGAGCGCATTATTGAGATCATTAGG 244599 Query 42918 GAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGC 42977 || || || || |||||| | ||||||||||| | | |||||| || | ||| Sbjct 244598 GATGCTGTCGAAATCGAGCAAGAGTTCCTCACCGAAGCCCTGCCCTGCAATTTGATTGGC 244539 Query 42978 ATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAG 43037 |||||| || |||||||| | ||||||| | | |||||||| | ||| ||| || Sbjct 244538 ATGAACTGCGTCCTCATGTCCCAGTACATTGAATTTGTCGCCGATCGTCTGCTGATGGAG 244479 Query 43038 ATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCG 43097 | ||| | | |||||||||| | |||||| || ||||| | ||||| Sbjct 244478 CTCGGTGTGGGTAAGATCTACAACACTAAGAATCCCTTCAGTTTCATGGATATGATCTCT 244419 Query 43098 TTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||| || ||||| ||||| || ||||| || ||||| |||||| Sbjct 244418 CTGGACGGAAAGACAAACTTCTTTGAGAAAAAGGTTGCCGAGTACCAG 244371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944316358795600