Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq111 253 4e-62
>seq111
Length=362587
Score = 253 bits (280), Expect = 4e-62
Identities = 559/828 (68%), Gaps = 25/828 (3%)
Strand=Plus/Minus
Query 42329 CTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACT 42388
|||| |||||| | || ||| | || || | |||||| || | | ||||| ||
Sbjct 245184 CTCCTTCTGGACTGTGGAAGAGGTGGATCTATCGAAGGACGCGACAGACTGGGCCCGTCT 245125
Query 42389 GTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGG 42448
| | || ||||| | ||| || || | |||||||||||||| ||||| || ||
Sbjct 245124 GACCGACAACGAGCGCTACTTCATCTCCCACGTGCTGGCCTTCTTCGCTGCCTCCGATGG 245065
Query 42449 CATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCG 42508
||| || || ||||| |||| | | |||| | ||||||||| | ||||||||
Sbjct 245064 CATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCGCG 245005
Query 42509 CTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACT 42568
|||||||||||||||||||| ||||| |||||||||||||| ||| |||| || |
Sbjct 245004 TTGCTTCTACGGCTTCCAGATTGCCATGGAGAACGTGCACTCCGAGATGTA---CAGCGT 244948
Query 42569 GCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGA 42625
||||| |||| ||||| | ||| || ||||| || ||||||| || | ||
Sbjct 244947 GCTCATTGACACCTACATACGGGAGCCGAAGGAGCGCGACTACTTGTTCAATGCTGTTGA 244888
Query 42626 GACGATGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGA-----TCGAGA 42678
||| ||||| ||| | ||| ||||| |||||||| || ||||| |||| |
Sbjct 244887 GACCATGCCGGCTG--TAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATATCCTCGAAA 244830
Query 42679 GTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCT 42738
|| | |||| || | |||| | | | |||||| | ||||| || || |||||||
Sbjct 244829 ---TCGGC-CAAC-TTTGCCGAGCGTATTATTGCCTTTGCAGCCGTGGAAGGAATCTTCT 244775
Query 42739 TCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTC 42797
|| ||| ||| ||||| ||||| ||||| ||| || || || |||||||| ||
Sbjct 244774 TCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTC-ATGCCCGGTCTG 244716
Query 42798 ACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTC 42857
|||||||| ||||| || ||| | ||||| || || || | |||||||| |||
Sbjct 244715 ACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACTGCGACTTTGCGGTGCTC 244656
Query 42858 CTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACG 42917
||| | | || || ||| ||| | |||||| | | ||||| | |
Sbjct 244655 ATGTACCAG---CATCTGGTGCAGCGTCCCAAGCGGGAGCGCATTATTGAGATCATTAGG 244599
Query 42918 GAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGC 42977
|| || || || |||||| | ||||||||||| | | |||||| || | |||
Sbjct 244598 GATGCTGTCGAAATCGAGCAAGAGTTCCTCACCGAAGCCCTGCCCTGCAATTTGATTGGC 244539
Query 42978 ATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAG 43037
|||||| || |||||||| | ||||||| | | |||||||| | ||| ||| ||
Sbjct 244538 ATGAACTGCGTCCTCATGTCCCAGTACATTGAATTTGTCGCCGATCGTCTGCTGATGGAG 244479
Query 43038 ATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCG 43097
| ||| | | |||||||||| | |||||| || ||||| | |||||
Sbjct 244478 CTCGGTGTGGGTAAGATCTACAACACTAAGAATCCCTTCAGTTTCATGGATATGATCTCT 244419
Query 43098 TTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||| || ||||| ||||| || ||||| || ||||| ||||||
Sbjct 244418 CTGGACGGAAAGACAAACTTCTTTGAGAAAAAGGTTGCCGAGTACCAG 244371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944316358795600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |