Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq162 109 5e-19
>seq162
Length=246154
Score = 109 bits (120), Expect = 5e-19
Identities = 413/634 (65%), Gaps = 22/634 (3%)
Strand=Plus/Minus
Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-TA 20193
||||| || ||||| |||| |||||| | |||||| || | ||| ||| | ||
Sbjct 68224 GGAAACGGTCGTGGCTTGCGTTCTAGCTGCTCCTTTAGTGGATCAACATG-GTTAAGATA 68166
Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTC-CCCGGGTCTAAGACCAGTAACATGAG 20252
| || | || |||| ||||| | ||| || |||| | ||| || || ||||| |
Sbjct 68165 CACATGAGTGTCGCCCATGGTGTGGACAAAATCGCCCGTCTTCAAGCCC-GTTACATGTG 68107
Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312
||| ||| | || | |||| |||| ||| ||||| || || || |||| |||||||
Sbjct 68106 CAATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGT 68047
Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC------GTCAGCTACATAAAATT 20366
| | || |||||||||||| ||||| ||||| || | || || || ||||
Sbjct 68046 CGGCGCTCCGCTGATACAGCTGGCAGGAGAGCTCTCCTCGAGTTTGAGAGACGTAGAATT 67987
Query 20367 GACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCAC 20426
| | |||| ||||| || | ||||| | | |||| || ||||| ||
Sbjct 67986 GTGCAAGGCAGTGGCAGGGGGGTAATGCCATTTTTGGTATGTCCAGGGGATTCCAGGCGG 67927
Query 20427 ACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTAC----GAC 20482
|||||||||| | | |||| ||||||| | || ||| ||| ||| |
Sbjct 67926 ACATAATGATGCGACGATCGGATGGATTATCCCTGAT--GGTCC-TAAT-TACCTGGCGC 67871
Query 20483 AATTGGTCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAA 20541
|| ||||| | |||| ||| | |||||| | || | || | | ||| | || |||||
Sbjct 67870 AACTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGC-CATACTCGGCACCAAA 67812
Query 20542 GTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCC 20601
||| | |||||| || || || ||||| |||| ||| ||| | | || || ||||
Sbjct 67811 GTGTCGCCACTGAAAGCCATAGACAGGACCCAGATCTCCCACGGCGCGGTCCGTGTGGCC 67752
Query 20602 GCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC-TCCTGTTCTTG 20660
|| | | || ||||| |||| || || ||||| || | || | || | ||
Sbjct 67751 CAGCTTGTCTAGAAACTCTCTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTTCGCCTG 67692
Query 20661 AAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTC 20720
||| | | | || || | || || |||||| |||||||| | ||| || | |
Sbjct 67691 CAAG-AGCTTCGCATCTGTCTTTCCGGCCACAAACCATAGCAGCTCCTCCACGACCGCCC 67633
Query 20721 GCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAA 20754
| | ||||||||||| ||||| || | ||||||
Sbjct 67632 GAAAGAACACCCGCTTGGTGGTCAGCAGGGGAAA 67599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441362124295400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |