Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq162 109 5e-19 >seq162 Length=246154 Score = 109 bits (120), Expect = 5e-19 Identities = 413/634 (65%), Gaps = 22/634 (3%) Strand=Plus/Minus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-TA 20193 ||||| || ||||| |||| |||||| | |||||| || | ||| ||| | || Sbjct 68224 GGAAACGGTCGTGGCTTGCGTTCTAGCTGCTCCTTTAGTGGATCAACATG-GTTAAGATA 68166 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTC-CCCGGGTCTAAGACCAGTAACATGAG 20252 | || | || |||| ||||| | ||| || |||| | ||| || || ||||| | Sbjct 68165 CACATGAGTGTCGCCCATGGTGTGGACAAAATCGCCCGTCTTCAAGCCC-GTTACATGTG 68107 Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312 ||| ||| | || | |||| |||| ||| ||||| || || || |||| ||||||| Sbjct 68106 CAATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGT 68047 Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC------GTCAGCTACATAAAATT 20366 | | || |||||||||||| ||||| ||||| || | || || || |||| Sbjct 68046 CGGCGCTCCGCTGATACAGCTGGCAGGAGAGCTCTCCTCGAGTTTGAGAGACGTAGAATT 67987 Query 20367 GACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCAC 20426 | | |||| ||||| || | ||||| | | |||| || ||||| || Sbjct 67986 GTGCAAGGCAGTGGCAGGGGGGTAATGCCATTTTTGGTATGTCCAGGGGATTCCAGGCGG 67927 Query 20427 ACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTAC----GAC 20482 |||||||||| | | |||| ||||||| | || ||| ||| ||| | Sbjct 67926 ACATAATGATGCGACGATCGGATGGATTATCCCTGAT--GGTCC-TAAT-TACCTGGCGC 67871 Query 20483 AATTGGTCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAA 20541 || ||||| | |||| ||| | |||||| | || | || | | ||| | || ||||| Sbjct 67870 AACTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGC-CATACTCGGCACCAAA 67812 Query 20542 GTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCC 20601 ||| | |||||| || || || ||||| |||| ||| ||| | | || || |||| Sbjct 67811 GTGTCGCCACTGAAAGCCATAGACAGGACCCAGATCTCCCACGGCGCGGTCCGTGTGGCC 67752 Query 20602 GCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC-TCCTGTTCTTG 20660 || | | || ||||| |||| || || ||||| || | || | || | || Sbjct 67751 CAGCTTGTCTAGAAACTCTCTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTTCGCCTG 67692 Query 20661 AAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTC 20720 ||| | | | || || | || || |||||| |||||||| | ||| || | | Sbjct 67691 CAAG-AGCTTCGCATCTGTCTTTCCGGCCACAAACCATAGCAGCTCCTCCACGACCGCCC 67633 Query 20721 GCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAA 20754 | | ||||||||||| ||||| || | |||||| Sbjct 67632 GAAAGAACACCCGCTTGGTGGTCAGCAGGGGAAA 67599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441362124295400