Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq234 123 6e-23 seq23 118 3e-21 seq6 91.5 3e-13 >seq234 Length=227530 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| | ||| | ||| || || || || ||||| || | Sbjct 9909 CCACCACGAAGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGAT 9968 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| |||||||| || |||||||||| || |||||| ||||| Sbjct 9969 AGTGTTCGGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGA---TCTGGA 10025 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| ||||| || || ||||| || ||||| || | ||| || ||| Sbjct 10026 GGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCG 10085 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || ||||| || || |||||||| Sbjct 10086 ACCTCAAGAGTTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCAT 10135 >seq23 Length=1278451 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | ||| | ||| || || ||||| || ||||| | Sbjct 1263407 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263466 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || || || | || || || |||||||| |||||||| || ||| Sbjct 1263467 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTG---GTCTGGG 1263523 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || || |||||||| || || |||||||| || || | ||| | || Sbjct 1263524 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCA 1263583 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || |||||||||||||| || || |||||||| Sbjct 1263584 ACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | ||| | ||| || || ||||| || ||||| | Sbjct 1263635 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263694 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || || || | || || || |||||||| |||||||| || ||| Sbjct 1263695 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTG---GTCTGGG 1263751 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || || |||||||| || || |||||||| || || | ||| | || Sbjct 1263752 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCA 1263811 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || |||||||||||||| || || |||||||| Sbjct 1263812 ACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | ||| | ||| || || ||||| || ||||| | Sbjct 1263863 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263922 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || || || | || || || |||||||| |||||||| || ||| Sbjct 1263923 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTG---GTCTGGG 1263979 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || || |||||||| || || |||||||| || || | ||| | || Sbjct 1263980 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCA 1264039 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || |||||||||||||| || || |||||||| Sbjct 1264040 ACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | || || | ||| | || || || ||||| || ||||| | Sbjct 1263178 TCCACCGCGGAGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 1263237 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 || || || || || || | || || || |||||||| |||||||| || ||| Sbjct 1263238 AAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTG---GTCTGG 1263294 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||| || || |||||||| || || |||||||| || || | ||| | || Sbjct 1263295 GGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTC 1263354 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || |||||||||||||| || || |||||||| Sbjct 1263355 AACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405 Score = 104 bits (114), Expect = 6e-17 Identities = 170/243 (70%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | ||| | ||| || || ||||| || ||||| | Sbjct 1264091 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1264150 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || || || | || || || |||||||| |||||||| || ||| Sbjct 1264151 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTG---GTCTGGG 1264207 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || || |||||||| || || |||||||| || || | ||| | || Sbjct 1264208 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCA 1264267 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG--TTAT 288481 || || | ||||| || || || |||| || || || || ||||||||| || |||| Sbjct 1264268 ACCTCCAAGGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTATTAT 1264327 Query 288482 TCT 288484 ||| Sbjct 1264328 TCT 1264330 >seq6 Length=3104374 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||| || || || | || || || |||||| Sbjct 2898444 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 2898385 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||||||| || || || || |||||||| || || || || Sbjct 2898384 ATCAGACGCTGCTG---ATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACA 2898328 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || | ||||| ||||| || || ||||| || Sbjct 2898327 TTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTC 2898268 Query 288460 ACGAATATCTGCATT 288474 || || || |||||| Sbjct 2898267 ACAAAAATTTGCATT 2898253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179625153786930