Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq134 102 2e-16 >seq134 Length=322322 Score = 102 bits (112), Expect = 2e-16 Identities = 279/421 (66%), Gaps = 6/421 (1%) Strand=Plus/Plus Query 297254 GGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAA-CCATTCAC 297312 |||||||| | | || || || ||||| ||||| ||||| || |||| || ||||| Sbjct 20425 GGATTGTAGTTGGCTATCTTGGTGGACCATCCGGTGCCGATGCC-CTCGGCTCCGTTCAC 20483 Query 297313 CAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATA 297372 ||||| |||| || | |||| ||| || ||| |||||| | | || ||||| Sbjct 20484 CAGAACCATCGGTATGATGGGCAGATACCACAATGGCTCGATCCTCTGGCCATCATCGGT 20543 Query 297373 CAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAG 297432 | | || | ||| || ||||||| | | | | | || ||| | || || Sbjct 20544 CTGGTACTCCAGCAGCGGATCGTCCAGGGGGTGGTAGATGAGGCGCGTCAGCGGCGACAT 20603 Query 297433 TTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAA 297492 ||||||||| || || || || || ||||| || ||| ||| | | |||||| Sbjct 20604 CAATGTGAAAATGTAACGAGCGCTGGCACAGTCCTTGCCGCCCGTCAACCGAGTACCGAA 20663 Query 297493 CTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTT 297552 ||| || |||| || | |||||||||| || ||||| || | ||| || || || Sbjct 20664 CTGACCGCGCGGCTCCAGCAAGTTGATGTTGTTCGAGCCGACGTAGTTCTGGGCCAGATT 20723 Query 297553 CACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC-GCTATGCTCTGCAACGT 297611 |||||| ||| || || || | ||||| ||||| || || | || ||| || ||| Sbjct 20724 CACGATAGTCATCTGGAGGGAAACCTCGCCGTGGTGGTATGCCGACAT-CTCAGCCACGG 20782 Query 297612 AACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA--AGCTGAATA 297669 |||| | ||| || |||||||| ||| | | ||||||||||| || |||| | Sbjct 20783 AACCAGACAGCTGGGCCACCTTCACCTCGCGCTTGTCGTTGCGCTTGAAGCAGGTGAACA 20842 Query 297670 T 297670 | Sbjct 20843 T 20843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102852657192250