Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq111 136 5e-27 seq22 123 3e-23 seq134 111 2e-19 seq328 98.7 1e-15 >seq111 Length=362587 Score = 136 bits (150), Expect = 5e-27 Identities = 299/448 (67%), Gaps = 0/448 (0%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||| ||||| |||||||||||||| ||||||| ||| | ||||| Sbjct 244374 GTACTCGGCAACCTTTTTCTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCATATCCAT 244433 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 ||| || || ||||| | ||| | || | ||| || | || | || ||||| Sbjct 244434 GAAACTGAAGGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCATCAGCAGACG 244493 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 ||| | ||| | |||||||||| ||||| | ||||||| || || | || || Sbjct 244494 ATCGGCGACAAATTCAATGTACTGGGACATGAGGACGCAGTTCATGCCAATCAAATTGCA 244553 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997 || || || || || |||| | | ||| ||||| || || |||| | ||| | Sbjct 244554 GGGCAGGGCTTCGGTGAGGAACTCTTGCTCGATTTCGACAGCATCCCTAATGATCTCAAT 244613 Query 125998 AATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTTG 126057 |||| ||| | || | | || | || | | | ||| ||||| || Sbjct 244614 AATGCGCTCCCGCTTGGGACGCTGCACCAGATGCTGGTACATGAGCACCGCAAAGTCGCA 244673 Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||||||||| |||||||| ||||| || || || |||||| ||| || |||||||| || Sbjct 244674 GTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCC 244733 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| ||| || |||| ||| || |||||||||||| ||||| Sbjct 244734 ACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATTCCTTCCACGGC 244793 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || |||| | |||||| |||||| Sbjct 244794 TGCAAAGGCAATAATACGCTCGGCAAAG 244821 >seq22 Length=1073832 Score = 123 bits (136), Expect = 3e-23 Identities = 282/414 (68%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 10742 ATCTTCTCGCGACCGCGCACA-CTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 10800 || || || ||||| |||| | |||| || |||| | || ||| ||||||||||| Sbjct 979058 ATTTTTTCACGACCTGACACATCCGGGTTCGG-CACGACAACCTGACGGTCAAAGCGACC 979000 Query 10801 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 10860 ||||| || || || ||||| | ||| |||||| || ||||| || | | | Sbjct 978999 CGGGCGCAGAAGAGCAGGATCAAGCACGTCAGGGCGGTTGGTGGCCGCAATCAGGATCAC 978940 Query 10861 GCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCG 10920 ||| | | | ||||| || ||||| ||| || | || || | |||||| ||||| Sbjct 978939 GCCTTCGTTGCTTTCAAACCCGTCCATTTCAACCAGCATCTGGTTCAGGGTTTGCTCGCG 978880 Query 10921 TTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 10979 ||| ||||| | || | | || |||| || || || |||||||||||||| | Sbjct 978879 TTCGTCATTGCCACCGCCCATC-CCTGCACCACGATGGCGGCCAACGGCGTCAATTTCGT 978821 Query 10980 CGATGAAAACGATACACGGTTGAT-TTTCACGGGCAACTTCAAAGATATCTCGGACTCTC 11038 | ||||| | || || || | |||| | | || | || || || || || | Sbjct 978820 CAATGAAGATAATGCATGGGGCAGCTTTCTTGCCCTGCT-CGAACATGTCGCGCACACGG 978762 Query 11039 TTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGG 11097 || || ||||||||||||||||| ||||| | | ||||| || | || ||| || Sbjct 978761 GAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAACCGGAA-ATGGTGAAGAACGG 978703 Query 11098 GACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || |||| ||||||||||||||| ||||| || ||||| ||||| || || || Sbjct 978702 CACATTGGCTTCACCCGCGATGGCACGGGCCAGCAGGGTTTTCCCTGTTCCCGG 978649 >seq134 Length=322322 Score = 111 bits (122), Expect = 2e-19 Identities = 184/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967 || ||||| ||| | | || || || || ||||| | ||| || || | ||||| ||| Sbjct 20635 TCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 20694 Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 172026 || || || | ||||| | ||||| || || || || ||| | |||||| || || || Sbjct 20695 TTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTG-GAGGGAAACCTCGCC 20753 Query 172027 GTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATC 172086 ||| ||||| |||||| | || || || | | | || ||| |||||||||| ||| Sbjct 20754 GTGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCTCGCG 20813 Query 172087 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 |||| ||| | |||||| | |||||||||| | |||| ||||||||||| || Sbjct 20814 CTTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGGCCATC 20873 Query 172147 GGCCATGTGCGCGATGGAACGCT 172169 ||| | | |||||| |||| Sbjct 20874 CACCAGGCTGGGGATGGAGCGCT 20896 >seq328 Length=165906 Score = 98.7 bits (108), Expect = 1e-15 Identities = 220/327 (67%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346 || |||| |||||| ||||| | |||||||| ||||| || | ||| || || ||| Sbjct 106676 TCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGGATTTCTTAGCT 106617 Query 114347 GTCTC-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 114405 ||| || ||| ||| | || | || || | |||| |||||||| | ||| || Sbjct 106616 -TCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAACAGTTTT 106558 Query 114406 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 114465 || | || | | |||| | ||||||| | | ||| | ||| || | Sbjct 106557 GGTTACATCTTTTAATTTTTTGAAATCAAATGTTT---TTTCTGGTGTTACAAACATGTT 106501 Query 114466 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 114525 ||| || ||||| || | ||| || |||| | ||||||| ||| |||||| | ||| Sbjct 106500 AAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGTACTCAACAAT 106441 Query 114526 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 114585 ||| ||||| ||||| | ||||| ||||| | || | |||||| |||| | || Sbjct 106440 TTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATT 106381 Query 114586 ACACGCATCCTTGTAAAGCATGTATGG 114612 ||| | |||||| ||||||||||||| Sbjct 106380 ACAGGAATCCTTAAAAAGCATGTATGG 106354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597339151509800