Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq111 136 5e-27
seq22 123 3e-23
seq134 111 2e-19
seq328 98.7 1e-15
>seq111
Length=362587
Score = 136 bits (150), Expect = 5e-27
Identities = 299/448 (67%), Gaps = 0/448 (0%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
||| || ||||| ||||| |||||||||||||| ||||||| ||| | |||||
Sbjct 244374 GTACTCGGCAACCTTTTTCTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCATATCCAT 244433
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877
||| || || ||||| | ||| | || | ||| || | || | || |||||
Sbjct 244434 GAAACTGAAGGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCATCAGCAGACG 244493
Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937
||| | ||| | |||||||||| ||||| | ||||||| || || | || ||
Sbjct 244494 ATCGGCGACAAATTCAATGTACTGGGACATGAGGACGCAGTTCATGCCAATCAAATTGCA 244553
Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997
|| || || || || |||| | | ||| ||||| || || |||| | ||| |
Sbjct 244554 GGGCAGGGCTTCGGTGAGGAACTCTTGCTCGATTTCGACAGCATCCCTAATGATCTCAAT 244613
Query 125998 AATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTTG 126057
|||| ||| | || | | || | || | | | ||| ||||| ||
Sbjct 244614 AATGCGCTCCCGCTTGGGACGCTGCACCAGATGCTGGTACATGAGCACCGCAAAGTCGCA 244673
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
||||||||| |||||||| ||||| || || || |||||| ||| || |||||||| ||
Sbjct 244674 GTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCC 244733
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|||||||||| ||| || |||| ||| || |||||||||||| |||||
Sbjct 244734 ACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATTCCTTCCACGGC 244793
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAG 126205
|| || |||| | |||||| ||||||
Sbjct 244794 TGCAAAGGCAATAATACGCTCGGCAAAG 244821
>seq22
Length=1073832
Score = 123 bits (136), Expect = 3e-23
Identities = 282/414 (68%), Gaps = 8/414 (2%)
Strand=Plus/Minus
Query 10742 ATCTTCTCGCGACCGCGCACA-CTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 10800
|| || || ||||| |||| | |||| || |||| | || ||| |||||||||||
Sbjct 979058 ATTTTTTCACGACCTGACACATCCGGGTTCGG-CACGACAACCTGACGGTCAAAGCGACC 979000
Query 10801 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 10860
||||| || || || ||||| | ||| |||||| || ||||| || | | |
Sbjct 978999 CGGGCGCAGAAGAGCAGGATCAAGCACGTCAGGGCGGTTGGTGGCCGCAATCAGGATCAC 978940
Query 10861 GCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCG 10920
||| | | | ||||| || ||||| ||| || | || || | |||||| |||||
Sbjct 978939 GCCTTCGTTGCTTTCAAACCCGTCCATTTCAACCAGCATCTGGTTCAGGGTTTGCTCGCG 978880
Query 10921 TTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 10979
||| ||||| | || | | || |||| || || || |||||||||||||| |
Sbjct 978879 TTCGTCATTGCCACCGCCCATC-CCTGCACCACGATGGCGGCCAACGGCGTCAATTTCGT 978821
Query 10980 CGATGAAAACGATACACGGTTGAT-TTTCACGGGCAACTTCAAAGATATCTCGGACTCTC 11038
| ||||| | || || || | |||| | | || | || || || || || |
Sbjct 978820 CAATGAAGATAATGCATGGGGCAGCTTTCTTGCCCTGCT-CGAACATGTCGCGCACACGG 978762
Query 11039 TTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGG 11097
|| || ||||||||||||||||| ||||| | | ||||| || | || ||| ||
Sbjct 978761 GAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAACCGGAA-ATGGTGAAGAACGG 978703
Query 11098 GACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151
|| |||| ||||||||||||||| ||||| || ||||| ||||| || || ||
Sbjct 978702 CACATTGGCTTCACCCGCGATGGCACGGGCCAGCAGGGTTTTCCCTGTTCCCGG 978649
>seq134
Length=322322
Score = 111 bits (122), Expect = 2e-19
Identities = 184/263 (70%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967
|| ||||| ||| | | || || || || ||||| | ||| || || | ||||| |||
Sbjct 20635 TCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 20694
Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 172026
|| || || | ||||| | ||||| || || || || ||| | |||||| || || ||
Sbjct 20695 TTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTG-GAGGGAAACCTCGCC 20753
Query 172027 GTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATC 172086
||| ||||| |||||| | || || || | | | || ||| |||||||||| |||
Sbjct 20754 GTGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCTCGCG 20813
Query 172087 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146
|||| ||| | |||||| | |||||||||| | |||| ||||||||||| ||
Sbjct 20814 CTTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGGCCATC 20873
Query 172147 GGCCATGTGCGCGATGGAACGCT 172169
||| | | |||||| ||||
Sbjct 20874 CACCAGGCTGGGGATGGAGCGCT 20896
>seq328
Length=165906
Score = 98.7 bits (108), Expect = 1e-15
Identities = 220/327 (67%), Gaps = 5/327 (2%)
Strand=Plus/Minus
Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346
|| |||| |||||| ||||| | |||||||| ||||| || | ||| || || |||
Sbjct 106676 TCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGGATTTCTTAGCT 106617
Query 114347 GTCTC-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 114405
||| || ||| ||| | || | || || | |||| |||||||| | ||| ||
Sbjct 106616 -TCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAACAGTTTT 106558
Query 114406 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 114465
|| | || | | |||| | ||||||| | | ||| | ||| || |
Sbjct 106557 GGTTACATCTTTTAATTTTTTGAAATCAAATGTTT---TTTCTGGTGTTACAAACATGTT 106501
Query 114466 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 114525
||| || ||||| || | ||| || |||| | ||||||| ||| |||||| | |||
Sbjct 106500 AAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGTACTCAACAAT 106441
Query 114526 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 114585
||| ||||| ||||| | ||||| ||||| | || | |||||| |||| | ||
Sbjct 106440 TTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATT 106381
Query 114586 ACACGCATCCTTGTAAAGCATGTATGG 114612
||| | |||||| |||||||||||||
Sbjct 106380 ACAGGAATCCTTAAAAAGCATGTATGG 106354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597339151509800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |