Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq6 111 2e-19
seq35 104 2e-17
seq23 93.3 4e-14
>seq6
Length=3104374
Score = 111 bits (122), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||||| | || | ||||| || || || |||||||| || |
Sbjct 2898481 ACCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2898422
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| | || || |||||||||||||| | || || |||||||| || || ||
Sbjct 2898421 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 2898362
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || || || || || ||| ||| ||| | || ||| || || ||
Sbjct 2898361 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 2898302
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | || | ||||||||| || | |||||| || ||||||||||||||
Sbjct 2898301 CTCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATTTT 2898251
>seq35
Length=832945
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | ||||| | ||| | ||||| || || || |||||||| || |
Sbjct 774107 CCACCGCGCAGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 774166
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || |||| || |||||||||||||| |||| | |||||||| || || |||
Sbjct 774167 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 774226
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || || || || || ||| ||| ||| | || || || || ||
Sbjct 774227 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 774286
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | |||| ||||||||| |||| || || ||||| || ||||| ||
Sbjct 774287 TCGAGGGTTATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 774336
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | ||||| | ||| | ||||| || || || |||||||| || |
Sbjct 773651 CCACCGCGCAGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 773710
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || |||| || |||||||||||||| |||| | |||||||| || || |||
Sbjct 773711 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 773770
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || || || || || ||| ||| ||| | || || || || ||
Sbjct 773771 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 773830
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||||||| |||| || || ||||| || |||||
Sbjct 773831 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773877
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | ||||| | ||| | ||||| || || || |||||||| || |
Sbjct 773879 CCACCGCGCAGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 773938
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || |||| || |||||||||||||| |||| | |||||||| || || |||
Sbjct 773939 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 773998
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || || || || || ||| ||| ||| | || || || || ||
Sbjct 773999 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 774058
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||||||| |||| || || ||||| || |||||
Sbjct 774059 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 774105
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| || || || |||||||| || | | || || |||| || ||||||||||||
Sbjct 773453 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 773512
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || | |||||||| || || ||||| || || || || || || || |||
Sbjct 773513 GCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 773572
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || || || || || || | || | ||||||||| |||| ||
Sbjct 773573 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 773632
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 773633 TTCACGAAGATCTGCAT 773649
>seq23
Length=1278451
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||||| | ||| | || || || || || |||||||| || |
Sbjct 1264090 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1264149
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | || || |||||||||||||| | ||||| ||||||||||| || ||
Sbjct 1264150 AAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 1264209
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || || || || || ||| || ||| | || || | || ||
Sbjct 1264210 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAAC 1264269
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | || | ||| ||||| ||||| ||||| || || || ||||||||
Sbjct 1264270 CTCCAAGGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 1264320
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||||| | ||| | || || || || || |||||||| || |
Sbjct 1263406 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1263465
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | || || |||||||||||||| | ||||| ||||||||||| || ||
Sbjct 1263466 AAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 1263525
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || || || || || ||| || ||| | || || | || ||
Sbjct 1263526 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAAC 1263585
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||| |||||||||| ||| || || || || |||||
Sbjct 1263586 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||||| | ||| | || || || || || |||||||| || |
Sbjct 1263634 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1263693
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | || || |||||||||||||| | ||||| ||||||||||| || ||
Sbjct 1263694 AAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 1263753
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || || || || || ||| || ||| | || || | || ||
Sbjct 1263754 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAAC 1263813
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||| |||||||||| ||| || || || || |||||
Sbjct 1263814 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||||| | ||| | || || || || || |||||||| || |
Sbjct 1263862 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1263921
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | || || |||||||||||||| | ||||| ||||||||||| || ||
Sbjct 1263922 AAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 1263981
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || || || || || ||| || ||| | || || | || ||
Sbjct 1263982 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAAC 1264041
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||| |||||||||| ||| || || || || |||||
Sbjct 1264042 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| | ||| | || || || || || |||||||| || | | || || | ||
Sbjct 1263194 AGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCC 1263253
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||||||||| | ||||| ||||||||||| || || ||||| || || ||
Sbjct 1263254 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1263313
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || ||| | || || | || || || | || | |||
Sbjct 1263314 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTT 1263373
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||||| ||| || || || || |||||
Sbjct 1263374 TTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499632714841400
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