Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_011056.1
Length=75811
Score E
Sequences producing significant alignments: (Bits) Value
seq22 199 2e-46
seq8 187 1e-42
>seq22
Length=1073832
Score = 199 bits (220), Expect = 2e-46
Identities = 463/694 (67%), Gaps = 13/694 (2%)
Strand=Plus/Minus
Query 65913 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 65972
|||||||| || || | | || || ||| | || || || || | ||| | |||
Sbjct 841125 ATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTTTGCCGCGTGGC 841066
Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032
|| || | || |||||||| ||||| ||| || || | ||| || ||| || ||
Sbjct 841065 CGTGTGATTGAAATCTACGGCCCTGAAAGTTCGGGTAAAACCACGCTGGCCCTGCATGCC 841006
Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 66092
| || | ||||||||| || |||| | |||| || || || |||||| | ||
Sbjct 841005 ATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACATGCCCTT 840946
Query 66093 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 66152
||||| | |||||| ||| || || ||||| || || || || | ||||||
Sbjct 840945 GACCCCGGTTACGCCAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGCCAGCCA 840886
Query 66153 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCC 66212
|| ||||||| ||||| ||||| |||| ||| || || ||||||| | ||
Sbjct 840885 GATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCGC--TATCG 840828
Query 66213 ATCATC--GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACA 66270
|| | || ||||| ||||||||| || || || || || ||||| || || || |
Sbjct 840827 ATGTGCTGGTAGTGGATAGTGTGGCGGCTCTTGTACCCCGCGCCGAGCTTGAGGGCGATA 840768
Query 66271 TCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGA 66330
| || ||| || ||||| ||||||||||| || ||| ||||||| ||||||||||||
Sbjct 840767 TGGGCGACAGCCATGTCGGTCTGCATGCCCGTCTCATGAGTCAGGCCCTGCGCAAGCTGA 840708
Query 66331 CCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGA 66390
|||| | |||| || | ||||| | | | | |||| ||| | || ||| |
Sbjct 840707 CCGGGTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATTCGTCTGAAAA 840648
Query 66391 TCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACCGGTGGTAAGGCTCTGCGCT 66447
| || |||| | ||| |||| || || |||||||| || || || ||| |
Sbjct 840647 TTGG---CGTGATGTTCGG---GAATCCGGAAACAACCACCGGCGGGAATGCCCTGAAAT 840594
Query 66448 TCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGG 66507
| || || || ||||| ||||| | ||| | |||| || ||||| || || |
Sbjct 840593 TTTATGCTTCCGTGCGGCTGGATATTCGCCGTATCGGGTCCATCAAGGACAAGGACGAAG 840534
Query 66508 CTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCC 66567
|| ||||||| || ||||| || || || ||||||||| |||| || ||| | | |
Sbjct 840533 TGGTTGGCAACCAGACCCGCGTCAAAGTGGTAAAGAACAAGATGGCCCCGCCGTTCAGGC 840474
Query 66568 AGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601
||| |||||| |||| | || ||||| || ||
Sbjct 840473 AGGTTGAGTTCGACATCATGTATGGCGAAGGGAT 840440
>seq8
Length=1553183
Score = 187 bits (206), Expect = 1e-42
Identities = 427/641 (67%), Gaps = 9/641 (1%)
Strand=Plus/Plus
Query 65964 CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGC 66023
||| | ||||| || | || |||||||| || || ||||| || | ||| || |
Sbjct 1134845 CCGCGTGGCCGTGTGATTGAAATCTACGGCCCGGAAAGCTCAGGTAAAACCACGCTGGCC 1134904
Query 66024 CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAA 66083
|| || || | || | ||||||||| || |||| | |||| || || || |||
Sbjct 1134905 CTGCATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAA 1134964
Query 66084 CATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTT 66143
||| |||| ||||| | ||||| ||| || || ||||| || || || || |
Sbjct 1134965 CATGCTCTTGACCCCGGTTACGCTAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATC 1135024
Query 66144 GTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGC 66203
|||||||| ||||||| ||||| ||||| |||| ||| || || ||||||
Sbjct 1135025 AGCCAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGC 1135084
Query 66204 GAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAA 66263
| | | | || ||||| |||||||||||| ||||| || || ||||| ||
Sbjct 1135085 GCCATCGATGTGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCCCGCGCCGAGCTTGAG 1135144
Query 66264 GGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGC 66323
|| || || || ||| || ||||| ||||| ||||| |||||| ||||||| |||||
Sbjct 1135145 GGCGATATGGGCGACAGCCATGTCGGTCTGCACGCCCGTCTGATGAGTCAGGCCTTGCGC 1135204
Query 66324 AAGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGC 66383
||||||||||| | |||| || | ||||| | | | | |||| ||| | ||
Sbjct 1135205 AAGCTGACCGGTTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATTCGT 1135264
Query 66384 GAGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACCGGTGGTAAGGCT 66440
||| || || |||| | ||| |||| || || || ||||| || || ||
Sbjct 1135265 CTGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACTACCGGCGGGAACGCC 1135318
Query 66441 CTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGC 66500
||| || || || || ||||| ||||| | || | |||| || |||||
Sbjct 1135319 CTGAAGTTTTATGCTTCCGTGCGGCTGGATATTCGTCGTATCGGGTCCATCAAGGACAAG 1135378
Query 66501 GATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCG 66560
|| || | || || |||| || ||||| || || || ||||||||| |||| || |||
Sbjct 1135379 GACGAAGTGGTTGGTAACCAGACCCGCGTCAAAGTGGTGAAGAACAAGATGGCCCCGCCG 1135438
Query 66561 CACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601
| | |||| |||||| |||| | || ||||| || ||
Sbjct 1135439 TTCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGAT 1135479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 242464681866020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |