Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq22 199 2e-46 seq8 187 1e-42 >seq22 Length=1073832 Score = 199 bits (220), Expect = 2e-46 Identities = 463/694 (67%), Gaps = 13/694 (2%) Strand=Plus/Minus Query 65913 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 65972 |||||||| || || | | || || ||| | || || || || | ||| | ||| Sbjct 841125 ATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTTTGCCGCGTGGC 841066 Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || | || |||||||| ||||| ||| || || | ||| || ||| || || Sbjct 841065 CGTGTGATTGAAATCTACGGCCCTGAAAGTTCGGGTAAAACCACGCTGGCCCTGCATGCC 841006 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 66092 | || | ||||||||| || |||| | |||| || || || |||||| | || Sbjct 841005 ATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACATGCCCTT 840946 Query 66093 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 66152 ||||| | |||||| ||| || || ||||| || || || || | |||||| Sbjct 840945 GACCCCGGTTACGCCAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGCCAGCCA 840886 Query 66153 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCC 66212 || ||||||| ||||| ||||| |||| ||| || || ||||||| | || Sbjct 840885 GATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCGC--TATCG 840828 Query 66213 ATCATC--GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACA 66270 || | || ||||| ||||||||| || || || || || ||||| || || || | Sbjct 840827 ATGTGCTGGTAGTGGATAGTGTGGCGGCTCTTGTACCCCGCGCCGAGCTTGAGGGCGATA 840768 Query 66271 TCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGA 66330 | || ||| || ||||| ||||||||||| || ||| ||||||| |||||||||||| Sbjct 840767 TGGGCGACAGCCATGTCGGTCTGCATGCCCGTCTCATGAGTCAGGCCCTGCGCAAGCTGA 840708 Query 66331 CCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGA 66390 |||| | |||| || | ||||| | | | | |||| ||| | || ||| | Sbjct 840707 CCGGGTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATTCGTCTGAAAA 840648 Query 66391 TCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACCGGTGGTAAGGCTCTGCGCT 66447 | || |||| | ||| |||| || || |||||||| || || || ||| | Sbjct 840647 TTGG---CGTGATGTTCGG---GAATCCGGAAACAACCACCGGCGGGAATGCCCTGAAAT 840594 Query 66448 TCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGG 66507 | || || || ||||| ||||| | ||| | |||| || ||||| || || | Sbjct 840593 TTTATGCTTCCGTGCGGCTGGATATTCGCCGTATCGGGTCCATCAAGGACAAGGACGAAG 840534 Query 66508 CTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCC 66567 || ||||||| || ||||| || || || ||||||||| |||| || ||| | | | Sbjct 840533 TGGTTGGCAACCAGACCCGCGTCAAAGTGGTAAAGAACAAGATGGCCCCGCCGTTCAGGC 840474 Query 66568 AGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601 ||| |||||| |||| | || ||||| || || Sbjct 840473 AGGTTGAGTTCGACATCATGTATGGCGAAGGGAT 840440 >seq8 Length=1553183 Score = 187 bits (206), Expect = 1e-42 Identities = 427/641 (67%), Gaps = 9/641 (1%) Strand=Plus/Plus Query 65964 CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGC 66023 ||| | ||||| || | || |||||||| || || ||||| || | ||| || | Sbjct 1134845 CCGCGTGGCCGTGTGATTGAAATCTACGGCCCGGAAAGCTCAGGTAAAACCACGCTGGCC 1134904 Query 66024 CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAA 66083 || || || | || | ||||||||| || |||| | |||| || || || ||| Sbjct 1134905 CTGCATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAA 1134964 Query 66084 CATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTT 66143 ||| |||| ||||| | ||||| ||| || || ||||| || || || || | Sbjct 1134965 CATGCTCTTGACCCCGGTTACGCTAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATC 1135024 Query 66144 GTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGC 66203 |||||||| ||||||| ||||| ||||| |||| ||| || || |||||| Sbjct 1135025 AGCCAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGC 1135084 Query 66204 GAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAA 66263 | | | | || ||||| |||||||||||| ||||| || || ||||| || Sbjct 1135085 GCCATCGATGTGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCCCGCGCCGAGCTTGAG 1135144 Query 66264 GGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGC 66323 || || || || ||| || ||||| ||||| ||||| |||||| ||||||| ||||| Sbjct 1135145 GGCGATATGGGCGACAGCCATGTCGGTCTGCACGCCCGTCTGATGAGTCAGGCCTTGCGC 1135204 Query 66324 AAGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGC 66383 ||||||||||| | |||| || | ||||| | | | | |||| ||| | || Sbjct 1135205 AAGCTGACCGGTTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATTCGT 1135264 Query 66384 GAGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACCGGTGGTAAGGCT 66440 ||| || || |||| | ||| |||| || || || ||||| || || || Sbjct 1135265 CTGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACTACCGGCGGGAACGCC 1135318 Query 66441 CTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGC 66500 ||| || || || || ||||| ||||| | || | |||| || ||||| Sbjct 1135319 CTGAAGTTTTATGCTTCCGTGCGGCTGGATATTCGTCGTATCGGGTCCATCAAGGACAAG 1135378 Query 66501 GATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCG 66560 || || | || || |||| || ||||| || || || ||||||||| |||| || ||| Sbjct 1135379 GACGAAGTGGTTGGTAACCAGACCCGCGTCAAAGTGGTGAAGAACAAGATGGCCCCGCCG 1135438 Query 66561 CACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601 | | |||| |||||| |||| | || ||||| || || Sbjct 1135439 TTCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGAT 1135479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242464681866020