Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq84 109 4e-19 seq18 102 6e-17 >seq84 Length=440599 Score = 109 bits (120), Expect = 4e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||| |||||||| ||||| | ||||| ||||||||||||| ||| | | Sbjct 350955 ACGGCCGGAGTCCATCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 350896 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 | |||||| ||| ||| ||| |||| ||||||| |||| | ||||| | | Sbjct 350895 ATCTTCCTGATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGC 350836 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || || | || |||||||||| | ||||||| ||||| || |||||| || | Sbjct 350835 GACCATCGTGTGCACCACAAGTTCACTGACACACACGCCGATCCCCACAACTCCCGACGC 350776 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 || |||| ||| | ||| |||| ||||| ||| | ||| |||| ||||||| Sbjct 350775 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCGGACGTGA 350721 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 |||||||||| |||||||||||||||||||| ||||||| |||||||| || |||||| Sbjct 350333 TCGGCGAGGGCTGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAAGCAGCCGAGC 350274 Query 108947 TGGG 108950 |||| Sbjct 350273 TGGG 350270 >seq18 Length=1287073 Score = 102 bits (112), Expect = 6e-17 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||||| | | |||||| || ||| | || |||||||||||||| || ||| Sbjct 233575 CAGAACACCCTGTACGATTGGGTGAGGGACCACCGCGTGCACCACAAGTACTCGGAGACG 233634 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 || || || ||||| |||||| | || |||| |||||||||||||| ||||| ||| Sbjct 233635 GACGCGGATCCGCACAATGCCAACCGCGGATTCTTCTTCTCGCACGTGGGCTGGCTGATG 233694 Query 108568 ATGACCAAGGACCCCGACGTG--ATCTCGGCCGGTCGAAAAATGGACATGACGGACATAT 108625 ||| ||| |||| || ||| | |||| || || | || ||||||| ||| | Sbjct 233695 ATGCTGAAGCACCCGGATGTGCTACGTCGG--GGCCGCCAGATCGACATGAGCGACGTGC 233752 Query 108626 ACTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCT 108685 | |||||| ||||| | ||| |||||||| || || || || || || ||| Sbjct 233753 TCGGCGATCCCGTGGTGCGCTTCCACCAGAAGTACTTCATACCCCTCAAGATCTTTTTCT 233812 Query 108686 GTTT 108689 | || Sbjct 233813 GCTT 233816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381763796723640