Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_011335.1
Length=119343
Score E
Sequences producing significant alignments: (Bits) Value
seq84 109 4e-19
seq18 102 6e-17
>seq84
Length=440599
Score = 109 bits (120), Expect = 4e-19
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414
|||||||| |||||||| ||||| | ||||| ||||||||||||| ||| | |
Sbjct 350955 ACGGCCGGAGTCCATCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 350896
Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474
| |||||| ||| ||| ||| |||| ||||||| |||| | ||||| | |
Sbjct 350895 ATCTTCCTGATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGC 350836
Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534
|| || | || |||||||||| | ||||||| ||||| || |||||| || |
Sbjct 350835 GACCATCGTGTGCACCACAAGTTCACTGACACACACGCCGATCCCCACAACTCCCGACGC 350776
Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589
|| |||| ||| | ||| |||| ||||| ||| | ||| |||| |||||||
Sbjct 350775 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCGGACGTGA 350721
Score = 84.2 bits (92), Expect = 2e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946
|||||||||| |||||||||||||||||||| ||||||| |||||||| || ||||||
Sbjct 350333 TCGGCGAGGGCTGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAAGCAGCCGAGC 350274
Query 108947 TGGG 108950
||||
Sbjct 350273 TGGG 350270
>seq18
Length=1287073
Score = 102 bits (112), Expect = 6e-17
Identities = 170/244 (70%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507
||||||||| | | |||||| || ||| | || |||||||||||||| || |||
Sbjct 233575 CAGAACACCCTGTACGATTGGGTGAGGGACCACCGCGTGCACCACAAGTACTCGGAGACG 233634
Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567
|| || || ||||| |||||| | || |||| |||||||||||||| ||||| |||
Sbjct 233635 GACGCGGATCCGCACAATGCCAACCGCGGATTCTTCTTCTCGCACGTGGGCTGGCTGATG 233694
Query 108568 ATGACCAAGGACCCCGACGTG--ATCTCGGCCGGTCGAAAAATGGACATGACGGACATAT 108625
||| ||| |||| || ||| | |||| || || | || ||||||| ||| |
Sbjct 233695 ATGCTGAAGCACCCGGATGTGCTACGTCGG--GGCCGCCAGATCGACATGAGCGACGTGC 233752
Query 108626 ACTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCT 108685
| |||||| ||||| | ||| |||||||| || || || || || || |||
Sbjct 233753 TCGGCGATCCCGTGGTGCGCTTCCACCAGAAGTACTTCATACCCCTCAAGATCTTTTTCT 233812
Query 108686 GTTT 108689
| ||
Sbjct 233813 GCTT 233816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381763796723640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |