Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq35 138 1e-27 seq6 134 1e-26 seq23 123 2e-23 seq51 95.1 1e-14 >seq35 Length=832945 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | ||||| |||||||| | || ||||| || || || ||||| ||| Sbjct 773420 GCGCCACCGCGAAGACGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCG 773479 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || || || ||||| || || || ||||||| ||||||||||| || Sbjct 773480 GACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGG 773539 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||||| |||| Sbjct 773540 GGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCG 773599 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | ||| | || ||||| ||||| || || || || ||||||||| Sbjct 773600 ACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 773650 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||||||| | || ||||| || || || ||||| ||| | Sbjct 773651 CCACCGCGCAGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 773710 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| | ||||| ||||||||||| || || Sbjct 773711 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 773770 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||||| |||||| Sbjct 773771 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 773830 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || ||||| ||||| || || || || ||||||||| Sbjct 773831 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 773878 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||||||| | || ||||| || || || ||||| ||| | Sbjct 773879 CCACCGCGCAGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 773938 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| | ||||| ||||||||||| || || Sbjct 773939 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 773998 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||||| |||||| Sbjct 773999 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 774058 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || ||||| ||||| || || || || ||||||||| Sbjct 774059 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 774106 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||||||| | || ||||| || || || ||||| ||| | Sbjct 774107 CCACCGCGCAGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 774166 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| | ||||| ||||||||||| || || Sbjct 774167 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 774226 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||||| |||||| Sbjct 774227 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 774286 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || ||||| ||||| || || || || ||||||||| Sbjct 774287 TCGAGGGTTATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 774334 >seq6 Length=3104374 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || || || ||||| ||| | Sbjct 2898480 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2898421 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||||| ||||||||||| || || Sbjct 2898420 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 2898361 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | |||||| Sbjct 2898360 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 2898301 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || |||||||| |||||||| ||||| Sbjct 2898300 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254 >seq23 Length=1278451 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| ||||||||| | |||||||| || || || ||||| || Sbjct 1263178 TCCACCGCGGAGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 1263237 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || ||||| || || ||| |||| | |||||||| || || || Sbjct 1263238 AAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 1263297 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | | || | |||||| | ||| || Sbjct 1263298 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAAC 1263357 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||||||||||||||| || ||||| |||||||| Sbjct 1263358 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||||||| | || ||||| || || || ||||| || Sbjct 1263407 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263466 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| |||| | |||||||| || || || Sbjct 1263467 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263526 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | || | |||||| | ||| || Sbjct 1263527 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACC 1263586 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||||||||||||||| || ||||| |||||||| Sbjct 1263587 TCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||||||| | || ||||| || || || ||||| || Sbjct 1263635 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263694 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| |||| | |||||||| || || || Sbjct 1263695 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263754 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | || | |||||| | ||| || Sbjct 1263755 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACC 1263814 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||||||||||||||| || ||||| |||||||| Sbjct 1263815 TCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||||||| | || ||||| || || || ||||| || Sbjct 1263863 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263922 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| |||| | |||||||| || || || Sbjct 1263923 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263982 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | || | |||||| | ||| || Sbjct 1263983 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACC 1264042 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||||||||||||||| || ||||| |||||||| Sbjct 1264043 TCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||||||| | || ||||| || || || ||||| || Sbjct 1264091 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1264150 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| |||| | |||||||| || || || Sbjct 1264151 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1264210 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | || | |||||| | ||| || Sbjct 1264211 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACC 1264270 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | |||||||| |||| ||||| ||||| |||||||| Sbjct 1264271 TCCAAGGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 1264317 >seq51 Length=625475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 50660 ATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGT---TGCGG 50716 |||||||||| ||||| | |||||||| || || |||| || ||||| | ||| | Sbjct 71393 ATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGGGCACCGTGCTCCTTGCTG 71334 Query 50717 CCCAACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAATTCG 50776 | ||||| ||||| ||||| |||| ||||||||||| | |||||||||| ||| Sbjct 71333 CGG---GGATTGAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTCGCCGAACTCG 71277 Query 50777 TGCACGTGGAACCCGTGAAAGCCCTTTGGAAG 50808 ||||| ||||| || || | ||||| | ||| Sbjct 71276 TGCACATGGAATCCATGCAGTCCCTTGGTAAG 71245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489298824400