Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq328 185 8e-42 seq234 114 1e-20 seq23 86.0 6e-12 seq6 86.0 6e-12 >seq328 Length=165906 Score = 185 bits (204), Expect = 8e-42 Identities = 879/1382 (64%), Gaps = 25/1382 (2%) Strand=Plus/Plus Query 123303 GCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAAC 123362 || || ||| |||| || ||||| ||||| | || |||||| | | ||| | ||| Sbjct 106039 GCTATTTATTTAGAGCCCTGGCATTCAGATGTTTTTGAATTTTTAGACCTCAAAAGAAAC 106098 Query 123363 ATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTG 123422 | || |||||||| ||| || ||| | || || ||||||||| | |||||| | Sbjct 106099 ACTGGAAAAGAAGAAAACCGAGCACGGGATCTTTTTTATGCTTTATGGATTCCCGATCTT 106158 Query 123423 TTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCC 123482 || ||| ||| || ||| | | |||||| | |||||||| || ||||| Sbjct 106159 TTCATGAAACGGGTTGAAGCAAATGAAAACTGGTCGTTGATGTGTCCACATAAATGTCCT 106218 Query 123483 GG-CTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGA 123541 || ||| | || |||| ||| | | ||||| | | || | |||| |||| || Sbjct 106219 GGACTTCAA-GATGTTTGGGGCGAAAAATTTGAGCAACTTTATGTCAAATATGAGCAAGA 106277 Query 123542 AGGCAAACAGGTTAGTCAGGTTCCG-GCACG-TGATTTGTTCAAATTT---ATTATCGAA 123596 || || | || || | | | | | | | | | ||| ||| ||||| ||| Sbjct 106278 GGG---ACGTGCTAATC--GAACAGTGAAAGCTCAGTCGTTATGGTTTGCCATTATAGAA 106332 Query 123597 ACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACC 123656 | ||||| ||||| || | || |||||||| | || || |||| || || || | | Sbjct 106333 TCGCAAGTTGAAACTGGTAACCCATACATGCTTTTTAAGGATTCCTGTAATAGAAAGAGC 106392 Query 123657 AATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATAC 123716 ||||| || | || || || ||||| |||||| | || | |||||| | || ||| Sbjct 106393 AATCAACAAAATGTTGGCACTATTAAATGCAGTAATTTATGTACAGAAATTGTTGAGTAC 106452 Query 123717 AGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-----TCGTT 123771 | | ||| | | || || || ||||| ||||| ||| | || | || Sbjct 106453 TCTGCACCTGATGAGATCGCTGTTTGCAATTTAGCTTCAATTGCACTTAACATGTTTGTA 106512 Query 123772 GCGTC-GAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTA 123830 | | ||||| | ||| ||||| ||| | ||| |||| |||||||| | Sbjct 106513 ACACCAGAAAAAA---CATTTGATTTCAAAAAATTAAAAGATGTAACCAAAACTGTTGCT 106569 Query 123831 AAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCT 123890 || ||| | || ||||| || || | || | ||| || ||| ||||| || Sbjct 106570 AAAAATCTTAATAAAATAATAGACATCAACTATTACCCCTTGCCAGAAGCTAAGAAATCC 106629 Query 123891 AATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATG 123950 ||||| | || | || | || | || ||||||| || || ||||| || | | Sbjct 106630 AATTTAAGGCATCGTCCAATTGGTATAGGTGTTCAAGGTTTCGCTGACGCTTTAATTCTA 106689 Query 123951 CTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACG-CAAATAGCCGAAAC 124009 |||| | || || ||||| || ||||| | || |||| | |||||| ||||| Sbjct 106690 ATGCGTTTTCCCTATGAAAGTGAAGAAGCTA-GTCTTTTAAACCAACAAATATTTGAAAC 106748 Query 124010 AATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGA 124069 ||||||| || ||||| || || || || |||||| | |||| || ||||||| Sbjct 106749 TATTTATTTTGGGGCTTTAGAAGCTAGTTGTGAACTTTCTCAAATATTTGGTCCGTACGA 106808 Query 124070 AAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTAC 124129 || || || || || | ||| || ||| | || || || |||||| || || Sbjct 106809 AACCTATAAAGGAAGTCCTGTAAGCAATGGCATTCTACAATATGATATGTGGGATAAAAC 106868 Query 124130 ACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCG 124189 || || || || ||||| ||| | ||| || ||| | ||||| | | Sbjct 106869 TCCAACGAACTTATGGGATTGGCAAAACCTGAAAGAAGACATTAAAAAACACGGAATTAG 106928 Query 124190 TAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAA 124249 || ||| |||| || || ||||| || ||| | ||||| |||||| | || || || Sbjct 106929 GAATTCGTTGTTAGTAGCTCCTATGCCTACAGCATCTACTGCCCAAATTATGGGTAATAA 106988 Query 124250 CGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTT 124309 |||||| ||||| || | || | ||| | || | ||||||| ||| | || || || Sbjct 106989 CGAATCATTCGAACCATATACAACTAATATATATACGAGACGAGTATTATCTGGTGAATT 107048 Query 124310 TCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAA 124369 ||||||| | ||||||||||| | || || | ||| | || | ||||| | Sbjct 107049 TCAAGTGGTCAATCATCATTTATTAAGGGATTTAACAGAGTTGGACTTATGGGATGATGA 107108 Query 124370 CATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGA 124429 ||| || |||| ||| | | ||| | | || || | | ||||| | Sbjct 107109 TATGAAAAATAAAATAATTTCAAGTAGGGGCTCCATTCAAAATATTGAAACTATTCCCCA 107168 Query 124430 ACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAAT 124489 | | || | || || ||||| ||||||||||| | |||| |||| | || Sbjct 107169 AAATGTTCGCGATCTTTATAAAACAGTGTGGGAAATTTCAGTTAAATCCACAATTAAGAT 107228 Query 124490 GGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGA 124549 ||| | || |||| || | | ||||||||||| || ||||| || ||| || || Sbjct 107229 GGCTGCTGATAGAGGTGCATTTATTGATCAAAGTCAGTCGTTTAATGTTCATGTGGCCGA 107288 Query 124550 ACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAAAA 124608 || | ||||| |||| |||||| | | | |||| ||| ||||| |||| Sbjct 107289 GCCTAACTACGGAAAATTGACATCCATACATTTTTTCTCCTGGA-AAGCTGGACTAAAAA 107347 Query 124609 CGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACA 124668 | || |||||||| ||| | || ||||| || ||| |||| || |||||||| ||||||| Sbjct 107348 CCGGAATGTATTATTTACGCACAAAACCAGCTGCCAATGCAATACAATTTACAGTCGACA 107407 Query 124669 AA 124670 || Sbjct 107408 AA 107409 >seq234 Length=227530 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || |||| || || | ||||| || || ||||| || || |||||||| | Sbjct 9909 CCACCACGAAGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCA--G 9966 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || || | ||| ||||||||||| || ||| | ||||| ||||| || || || | Sbjct 9967 ATAGTGTTCGGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAG 10026 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| |||||||| || ||||| || ||||| ||| | ||| || || | |||| Sbjct 10027 GAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGA 10086 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| | || ||||| || || || |||||||| || ||||| Sbjct 10087 CCTCAAGAGTTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCAT 10135 >seq23 Length=1278451 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | || ||| | ||| || || || ||||| ||||| || || || Sbjct 1263176 ATTCCACCGCGGAGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCA 1263235 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||| || || || ||| | || | || |||||||| || Sbjct 1263236 GAAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGG 1263295 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || || || || || | || | || | ||||||||| | ||| Sbjct 1263296 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCGGATGGCTC 1263354 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||||||||| ||||| || ||||| || ||||| Sbjct 1263355 AACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405 >seq6 Length=3104374 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 ||||| || || ||||| ||||| || || ||| ||| | | | ||| |||| | Sbjct 2898456 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCG--GACAGAGTGCGGCCATCCTCCAGCT 2898399 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | || || ||| | |||| || ||||| || || |||||||| || || || || || | Sbjct 2898398 GCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCT 2898339 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | |||| || | |||||| || | |||||| || | || | || ||||| | Sbjct 2898338 TAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCAG 2898279 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| |||||||||||||| Sbjct 2898278 TGAGAGTTTTCACAAAAATTTGCAT 2898254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992267172600