Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq111 132 6e-26 seq22 122 1e-22 seq8 120 4e-22 seq134 111 2e-19 >seq111 Length=362587 Score = 132 bits (146), Expect = 6e-26 Identities = 291/435 (67%), Gaps = 6/435 (1%) Strand=Plus/Plus Query 127247 TTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAATGGGTTC 127306 ||||| |||||||||||||| || || || ||| | ||||| ||| || || ||| Sbjct 244390 TTCTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCATATCCATGAAACTGAAGGGATTC 244449 Query 127307 TTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTCA 127366 || | ||| | || | ||| || | || | || |||||||| | ||| | ||| Sbjct 244450 TTAGTGTTGTAGATCTTACCCACACCGAGCTCCATCAGCAGACGATCGGCGACAAATTCA 244509 Query 127367 ATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAG 127426 ||||||| ||||| | ||||||| || || | || || || || || || | Sbjct 244510 ATGTACTGGGACATGAGGACGCAGTTCATGCCAATCAAATTGCAGGGCAGGGCTTCGGTG 244569 Query 127427 ATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTGTCCACCCCA 127486 | |||| | | ||| || || ||||| |||| | ||| | |||| || | ||| Sbjct 244570 AGGAACTCTTGCTCGATTTCGACAGCATCCCTAATGATCTC---AATAATGCGCTCCCGC 244626 Query 127487 ---GGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCTTGGTGGAGACCCTCG 127543 || | | | | || | | | ||| ||||| || ||||||||| ||| Sbjct 244627 TTGGGACGCTGCACCAGATGCTGGTACATGAGCACCGCAAAGTCGCAGTGGAGACCTTCG 244686 Query 127544 TCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAAC 127603 ||||| ||||| || || || |||||| |||||| |||||||| || |||||||||| | Sbjct 244687 TCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTTCTTCAGC 244746 Query 127604 CAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAT 127663 || || |||| ||| ||| ||||||||| || ||||| || || |||| Sbjct 244747 CAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATTCCTTCCACGGCTGCAAAGGCAATA 244806 Query 127664 AGACGCTCGGCAAAG 127678 | ||||||||||||| Sbjct 244807 ATACGCTCGGCAAAG 244821 >seq22 Length=1073832 Score = 122 bits (134), Expect = 1e-22 Identities = 255/372 (69%), Gaps = 6/372 (2%) Strand=Plus/Minus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||| ||||||||||| ||||| || || || ||||| | ||| |||||| || Sbjct 979017 CTGACGGTCAAAGCGACCCGGGCGCAGAAGAGCAGGATCAAGCACGTCAGGGCGGTTGGT 978958 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 ||||| || | | | ||| | | | || || || ||||| ||| || | || Sbjct 978957 GGCCGCAATCAGGATCACGCCTTCGTTGCTTTCAAACCCGTCCATTTCAACCAGCATCTG 978898 Query 12818 ATTGATGGTTTGTTCACGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTAC 12876 || | |||||| || ||||| ||||| | || | | || |||| || || | Sbjct 978897 GTTCAGGGTTTGCTCGCGTTCGTCATTGCCACCGCCCATC-CCTGCACCACGATGGCGGC 978839 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGAT-TTTCACGGGCAACTTCA 12935 | ||||||||||||||||||||||| | || || || | |||| | | || | Sbjct 978838 CAACGGCGTCAATTTCGTCAATGAAGATAATGCATGGGGCAGCTTTCTTGCCCTGCT-CG 978780 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || || || ||||| | || || |||||||||||||| || ||||| | | || Sbjct 978779 AACATGTCGCGCACACGGGAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAACCG 978720 Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 ||| || | || ||| || || |||| ||||||||||||||| ||||| || ||||| || Sbjct 978719 GAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCGATGGCACGGGCCAGCAGGGTTTT 978661 Query 13055 CCCCGTCCCTGG 13066 ||| || || || Sbjct 978660 CCCTGTTCCCGG 978649 >seq8 Length=1553183 Score = 120 bits (132), Expect = 4e-22 Identities = 255/374 (68%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||| ||||||||||| ||||| || || || ||||| | ||| |||||| || Sbjct 973712 CTGACGGTCAAAGCGACCCGGGCGTAGCAGAGCAGGATCAAGCACGTCAGGGCGGTTGGT 973771 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 |||||| || | | | ||| | | | || || || ||||| ||| || | || Sbjct 973772 CGCCGCAATCAGGATCACGCCTTCGTTGCTTTCAAACCCGTCCATTTCAACCAGCATCTG 973831 Query 12818 ATTGATGGTTTGTTCACGTTCATCATT---CGCGGGCATACCACCCGCACTGCGTTGCTT 12874 || | |||||| |||||||| ||||| || ||| ||| |||| || || Sbjct 973832 GTTCAGGGTTTGCTCACGTTCGTCATTGCCACCGCCCAT---ACCGGCACCACGATGGCG 973888 Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACA-CGGTTGATTTTCACGGGCAACTT 12933 || ||||||||||||||||||||||| | || || || | ||| | | || Sbjct 973889 GCCAACGGCGTCAATTTCGTCAATGAAGATAATGCATGGGGCGGCCTTC-TTGCCCTGTT 973947 Query 12934 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 12993 | || || || ||||| | || || |||||||||||||| || ||||| | | Sbjct 973948 CGAACATGTCGCGCACACGGGAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAAC 974007 Query 12994 CGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052 ||||| || | || ||| || || |||| ||||||||||||||| ||||| | || || Sbjct 974008 CGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCGATGGCACGGGCCAACAGAGTT 974066 Query 13053 TTCCCCGTCCCTGG 13066 ||||| || || || Sbjct 974067 TTCCCTGTTCCCGG 974080 >seq134 Length=322322 Score = 111 bits (122), Expect = 2e-19 Identities = 184/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 175928 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 175987 || ||||| ||| | | || || || || ||||| | ||||| || | ||||| ||| Sbjct 20635 TCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 20694 Query 175988 TTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 176046 || ||||| | |||| | |||| || || || || ||| | |||||| || || || Sbjct 20695 TTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTG-GAGGGAAACCTCGCC 20753 Query 176047 GTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCATC 176106 ||| ||||| |||||| | || ||||| | | | || ||| |||||||||| ||| Sbjct 20754 GTGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCTCGCG 20813 Query 176107 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 |||| ||| | |||||| | |||||||||| | |||| ||||||||||| || Sbjct 20814 CTTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGGCCATC 20873 Query 176167 GGCCATGTGTGCGATGGAACGCT 176189 ||| | | |||||| |||| Sbjct 20874 CACCAGGCTGGGGATGGAGCGCT 20896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613492360794600