Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq111 192 9e-44 >seq111 Length=362587 Score = 192 bits (212), Expect = 9e-44 Identities = 537/814 (66%), Gaps = 34/814 (4%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || || ||||| || ||||| ||||| || |||| || || |||||||| | ||| Sbjct 244384 ACCTTTTTCTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCATATCCATGAAACTGAAG 244443 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 || ||||| || ||| ||| | ||||| || ||||| | || || ||| Sbjct 244444 GGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCATCAGCAGACGATCGGCGACA 244503 Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823 ||||| ||||| |||| | | ||||| || || | || | ||| || ||| Sbjct 244504 AATTCAATGTACTGGGACATGAGGACGCAGTTCATGCCAATCAAATTGCAGGGCAGGGCT 244563 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTC------GGTCACAATC-TGCGAGAC 159876 || | || ||||| | ||| || ||||| || || | || |||| |||| | Sbjct 244564 TCGGTGAGGAACTCTTGCTCGATTTCGACAGCATCCCTAATGATCTCAATAATGCGCTCC 244623 Query 159877 ACGTTCGTACCCCGGCTTGCCCAAAATG-TGGTCCTTAAACAGGAGGCACGCAAAGTCGC 159935 || | || | ||| | | ||| |||| ||| ||| ||||||||||| Sbjct 244624 CGCTTGGGACGC-----TGCACCAGATGCTGGT------ACATGAGCACCGCAAAGTCGC 244672 Query 159936 AGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCC 159995 |||| || || ||||| |||||||| | ||||||||| | | | || || ||||||| | Sbjct 244673 AGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGC 244732 Query 159996 CACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGG 160055 ||||| || |||||||| || | ||||| ||||| || ||||| || ||||||| Sbjct 244733 CACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATTCCTTCCACGG 244792 Query 160056 CCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG--GTCCACCTTTT 160113 | ||||| || | | | ||| |||| ||| | | || || |||| Sbjct 244793 CTGCAAAGGCAATAATACGCTCGGCAAAGTTGGC--CGATTTCGAGGATATCCAGGACAG 244850 Query 160114 GGCCCATTCAGCCTT---CTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCT 160170 |||||| || ||||| |||| | || ||||||| ||| || || || ||||| Sbjct 244851 GGCCCAGTCTGCCTTGCGCTTTAC--AGC-CGGCATGGTCTCAACAGCATTGAACAAGTA 244907 Query 160171 GTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTG 160230 ||| |||||||| ||| || || |||| ||| |||||| || | ||| Sbjct 244908 GTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCGGAGTG 244967 Query 160231 CACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCT 160289 ||| || || ||||| ||||| ||| |||||| | ||||||| ||| |||||||| Sbjct 244968 CACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGAT-CTGCACCT 245026 Query 160290 CCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAG 160349 |||| |||| | | ||||||| | ||||| | || |||| ||| || ||||| | Sbjct 245027 CCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGAAGAAGG 245086 Query 160350 CCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCA 160409 ||| |||||| |||||||| | | ||||| | | | || | |||||| |||| Sbjct 245087 CCAGCACGTGGGAGATGAAGTAGCGCTCGTTGTCGGTCAGAC---GGGCCCAGTCTGTCG 245143 Query 160410 CGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 |||| | | | ||| ||||||||| | |||| Sbjct 245144 CGTCCTTCGATAGATCCACCTCTTCCACAGTCCA 245177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795135967183600