Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq111 192 9e-44
>seq111
Length=362587
Score = 192 bits (212), Expect = 9e-44
Identities = 537/814 (66%), Gaps = 34/814 (4%)
Strand=Plus/Plus
Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703
|| || ||||| || ||||| ||||| || |||| || || |||||||| | |||
Sbjct 244384 ACCTTTTTCTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCATATCCATGAAACTGAAG 244443
Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763
|| ||||| || ||| ||| | ||||| || ||||| | || || |||
Sbjct 244444 GGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCATCAGCAGACGATCGGCGACA 244503
Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823
||||| ||||| |||| | | ||||| || || | || | ||| || |||
Sbjct 244504 AATTCAATGTACTGGGACATGAGGACGCAGTTCATGCCAATCAAATTGCAGGGCAGGGCT 244563
Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTC------GGTCACAATC-TGCGAGAC 159876
|| | || ||||| | ||| || ||||| || || | || |||| |||| |
Sbjct 244564 TCGGTGAGGAACTCTTGCTCGATTTCGACAGCATCCCTAATGATCTCAATAATGCGCTCC 244623
Query 159877 ACGTTCGTACCCCGGCTTGCCCAAAATG-TGGTCCTTAAACAGGAGGCACGCAAAGTCGC 159935
|| | || | ||| | | ||| |||| ||| ||| |||||||||||
Sbjct 244624 CGCTTGGGACGC-----TGCACCAGATGCTGGT------ACATGAGCACCGCAAAGTCGC 244672
Query 159936 AGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCC 159995
|||| || || ||||| |||||||| | ||||||||| | | | || || ||||||| |
Sbjct 244673 AGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGC 244732
Query 159996 CACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGG 160055
||||| || |||||||| || | ||||| ||||| || ||||| || |||||||
Sbjct 244733 CACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATTCCTTCCACGG 244792
Query 160056 CCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG--GTCCACCTTTT 160113
| ||||| || | | | ||| |||| ||| | | || || ||||
Sbjct 244793 CTGCAAAGGCAATAATACGCTCGGCAAAGTTGGC--CGATTTCGAGGATATCCAGGACAG 244850
Query 160114 GGCCCATTCAGCCTT---CTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCT 160170
|||||| || ||||| |||| | || ||||||| ||| || || || |||||
Sbjct 244851 GGCCCAGTCTGCCTTGCGCTTTAC--AGC-CGGCATGGTCTCAACAGCATTGAACAAGTA 244907
Query 160171 GTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTG 160230
||| |||||||| ||| || || |||| ||| |||||| || | |||
Sbjct 244908 GTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCGGAGTG 244967
Query 160231 CACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCT 160289
||| || || ||||| ||||| ||| |||||| | ||||||| ||| ||||||||
Sbjct 244968 CACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGAT-CTGCACCT 245026
Query 160290 CCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAG 160349
|||| |||| | | ||||||| | ||||| | || |||| ||| || ||||| |
Sbjct 245027 CCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGAAGAAGG 245086
Query 160350 CCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCA 160409
||| |||||| |||||||| | | ||||| | | | || | |||||| ||||
Sbjct 245087 CCAGCACGTGGGAGATGAAGTAGCGCTCGTTGTCGGTCAGAC---GGGCCCAGTCTGTCG 245143
Query 160410 CGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443
|||| | | | ||| ||||||||| | ||||
Sbjct 245144 CGTCCTTCGATAGATCCACCTCTTCCACAGTCCA 245177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795135967183600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |