Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq234 120 1e-21 seq328 113 2e-19 seq224 95.1 5e-14 seq8 95.1 5e-14 >seq234 Length=227530 Score = 120 bits (132), Expect = 1e-21 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || |||||||| || ||| | || Sbjct 10135 ATGCAGATCTTTGTAAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCG 10076 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | ||| || ||||| || || |||||||||||||| |||||| Sbjct 10075 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 10016 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || ||| | || |||||| | |||||||| |||| | | |||||||| Sbjct 10015 CAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTGATTATAAC 9956 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 9955 ATTCAGAAGGA 9945 >seq328 Length=165906 Score = 113 bits (124), Expect = 2e-19 Identities = 319/485 (66%), Gaps = 9/485 (2%) Strand=Plus/Plus Query 502350 GAAATGAAAAAATATGGAACTAGAAACAGTTTGCTTACAGCACTAATGCCAACAGCATCT 502409 || || |||||| | |||| ||| || ||| | ||| | ||||| ||||||||| Sbjct 106906 GACATTAAAAAACACGGAATTAGGAATTCGTTGTTAGTAGCTCCTATGCCTACAGCATCT 106965 Query 502410 ACATCTCAACTATTAGGCAATTATGAATCATTTGAACCATTTACTTCTAATATATATACT 502469 || | ||| | | || ||| | |||||||| ||||||| ||| ||||||||||||| Sbjct 106966 ACTGCCCAAATTATGGGTAATAACGAATCATTCGAACCATATACAACTAATATATATACG 107025 Query 502470 AGAAGAACTTTAGCAGGTGAATTTATAGTTGTTAATAAACATTTAATAAATGATTTGAAT 502529 ||| || ||| | ||||||||| ||| || ||| | |||||| ||| ||||| | Sbjct 107026 AGACGAGTATTATCTGGTGAATTTCAAGTGGTCAATCATCATTTATTAAGGGATTTAACA 107085 Query 502530 GAAATCGGTGAATGGACTAATGAAATTAGACAAAAAGTAATTAATGATAATGGTTCTATT 502589 || | | |||| | |||| || | | | ||| ||||| || || || ||| Sbjct 107086 GAGTTGGACTTATGGGATGATGATATGAAAAATAAAATAATTTCAAGTAGGGGCTCCATT 107145 Query 502590 CAAAATAT----ATTACTACCTAATATAATTAAAAACATCTATCAAACTTCATATGAAAT 502645 |||||||| | || | || || || || | | ||| |||| | ||||| Sbjct 107146 CAAAATATTGAAACTATTCCCCAAAAT-GTTCGCGATCTTTATAAAACAGTGTGGGAAAT 107204 Query 502646 GAAACAAAAATATATAAT--AGATGGATGTTCTATACGGGGAGCTTATATAGATCAAACC 502703 | |||| | ||| |||||| || | ||| | || || | ||| ||||||| Sbjct 107205 TTCAGTTAAATCCACAATTAAGATGGCTGCT-GATA-GAGGTGCATTTATTGATCAAAGT 107262 Query 502704 CAATCTATGAATCTTTATTTTGCACAACCAGACTCTCAAAAATTAACTTCCTCTCAATTT 502763 || || | ||| || || | || | || ||| |||||| || ||| || ||| Sbjct 107263 CAGTCGTTTAATGTTCATGTGGCCGAGCCTAACTACGGAAAATTGACATCCATACATTTT 107322 Query 502764 TATGCATGGGAACAAGGATTAAAAACAGGGTTATATTATTTACGTAGCAAACCATCAGCA 502823 | | ||| || ||| ||||||| || | ||||||||||| | |||||| | || Sbjct 107323 TTCTCCTGGAAAGCTGGACTAAAAACCGGAATGTATTATTTACGCACAAAACCAGCTGCC 107382 Query 502824 AATGC 502828 ||||| Sbjct 107383 AATGC 107387 >seq224 Length=190040 Score = 95.1 bits (104), Expect = 5e-14 Identities = 134/187 (72%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 451273 TAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTAC 451332 ||| ||||| ||||| || || || ||||| ||| || | || || ||||| Sbjct 57832 TAAGATGAAGGAAACTGCCGAGGCTTACCTTGGTGAAAAAGTGACGCAGGCCGTCATTAC 57773 Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392 |||||| ||||| || || ||||| || || || ||||| || ||||| || | |||||| Sbjct 57772 TGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCAACCAAGGATGCCGGTCGTATTGC 57713 Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||| | | || || || || ||||| ||||| || || ||||| || || ||||| | Sbjct 57712 TGGCCTTGAAGTGCTGCGTATCATTAACGAACCAACCGCTGCTGCCCTTGCCTATGG-CA 57654 Query 451453 AGGAAAA 451459 |||||| Sbjct 57653 TGGAAAA 57647 >seq8 Length=1553183 Score = 95.1 bits (104), Expect = 5e-14 Identities = 134/187 (72%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 451273 TAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTAC 451332 ||| ||||| ||||| || || || ||||| ||| || | || || ||||| Sbjct 763538 TAAGATGAAGGAAACTGCCGAGGCTTACCTTGGTGAAAAAGTGACGCAGGCCGTCATTAC 763479 Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392 |||||| ||||| || || ||||| || || || ||||| || ||||| || | |||||| Sbjct 763478 TGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCAACCAAGGATGCCGGTCGTATTGC 763419 Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||| | | || || || || ||||| ||||| || || ||||| || || ||||| | Sbjct 763418 TGGCCTTGAAGTGCTGCGTATCATTAACGAACCAACCGCTGCTGCCCTTGCCTATGG-CA 763360 Query 451453 AGGAAAA 451459 |||||| Sbjct 763359 TGGAAAA 763353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975669417618980