Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq234 120 1e-21
seq328 113 2e-19
seq224 95.1 5e-14
seq8 95.1 5e-14
>seq234
Length=227530
Score = 120 bits (132), Expect = 1e-21
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || || || || || || || |||||||| || ||| | ||
Sbjct 10135 ATGCAGATCTTTGTAAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCG 10076
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||| ||| | | ||| || ||||| || || |||||||||||||| ||||||
Sbjct 10075 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 10016
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||||| || || ||| | || |||||| | |||||||| |||| | | ||||||||
Sbjct 10015 CAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTGATTATAAC 9956
Query 391230 ATTGATAAGGA 391240
||| | |||||
Sbjct 9955 ATTCAGAAGGA 9945
>seq328
Length=165906
Score = 113 bits (124), Expect = 2e-19
Identities = 319/485 (66%), Gaps = 9/485 (2%)
Strand=Plus/Plus
Query 502350 GAAATGAAAAAATATGGAACTAGAAACAGTTTGCTTACAGCACTAATGCCAACAGCATCT 502409
|| || |||||| | |||| ||| || ||| | ||| | ||||| |||||||||
Sbjct 106906 GACATTAAAAAACACGGAATTAGGAATTCGTTGTTAGTAGCTCCTATGCCTACAGCATCT 106965
Query 502410 ACATCTCAACTATTAGGCAATTATGAATCATTTGAACCATTTACTTCTAATATATATACT 502469
|| | ||| | | || ||| | |||||||| ||||||| ||| |||||||||||||
Sbjct 106966 ACTGCCCAAATTATGGGTAATAACGAATCATTCGAACCATATACAACTAATATATATACG 107025
Query 502470 AGAAGAACTTTAGCAGGTGAATTTATAGTTGTTAATAAACATTTAATAAATGATTTGAAT 502529
||| || ||| | ||||||||| ||| || ||| | |||||| ||| ||||| |
Sbjct 107026 AGACGAGTATTATCTGGTGAATTTCAAGTGGTCAATCATCATTTATTAAGGGATTTAACA 107085
Query 502530 GAAATCGGTGAATGGACTAATGAAATTAGACAAAAAGTAATTAATGATAATGGTTCTATT 502589
|| | | |||| | |||| || | | | ||| ||||| || || || |||
Sbjct 107086 GAGTTGGACTTATGGGATGATGATATGAAAAATAAAATAATTTCAAGTAGGGGCTCCATT 107145
Query 502590 CAAAATAT----ATTACTACCTAATATAATTAAAAACATCTATCAAACTTCATATGAAAT 502645
|||||||| | || | || || || || | | ||| |||| | |||||
Sbjct 107146 CAAAATATTGAAACTATTCCCCAAAAT-GTTCGCGATCTTTATAAAACAGTGTGGGAAAT 107204
Query 502646 GAAACAAAAATATATAAT--AGATGGATGTTCTATACGGGGAGCTTATATAGATCAAACC 502703
| |||| | ||| |||||| || | ||| | || || | ||| |||||||
Sbjct 107205 TTCAGTTAAATCCACAATTAAGATGGCTGCT-GATA-GAGGTGCATTTATTGATCAAAGT 107262
Query 502704 CAATCTATGAATCTTTATTTTGCACAACCAGACTCTCAAAAATTAACTTCCTCTCAATTT 502763
|| || | ||| || || | || | || ||| |||||| || ||| || |||
Sbjct 107263 CAGTCGTTTAATGTTCATGTGGCCGAGCCTAACTACGGAAAATTGACATCCATACATTTT 107322
Query 502764 TATGCATGGGAACAAGGATTAAAAACAGGGTTATATTATTTACGTAGCAAACCATCAGCA 502823
| | ||| || ||| ||||||| || | ||||||||||| | |||||| | ||
Sbjct 107323 TTCTCCTGGAAAGCTGGACTAAAAACCGGAATGTATTATTTACGCACAAAACCAGCTGCC 107382
Query 502824 AATGC 502828
|||||
Sbjct 107383 AATGC 107387
>seq224
Length=190040
Score = 95.1 bits (104), Expect = 5e-14
Identities = 134/187 (72%), Gaps = 1/187 (1%)
Strand=Plus/Minus
Query 451273 TAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTAC 451332
||| ||||| ||||| || || || ||||| ||| || | || || |||||
Sbjct 57832 TAAGATGAAGGAAACTGCCGAGGCTTACCTTGGTGAAAAAGTGACGCAGGCCGTCATTAC 57773
Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392
|||||| ||||| || || ||||| || || || ||||| || ||||| || | ||||||
Sbjct 57772 TGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCAACCAAGGATGCCGGTCGTATTGC 57713
Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452
||| | | || || || || ||||| ||||| || || ||||| || || ||||| |
Sbjct 57712 TGGCCTTGAAGTGCTGCGTATCATTAACGAACCAACCGCTGCTGCCCTTGCCTATGG-CA 57654
Query 451453 AGGAAAA 451459
||||||
Sbjct 57653 TGGAAAA 57647
>seq8
Length=1553183
Score = 95.1 bits (104), Expect = 5e-14
Identities = 134/187 (72%), Gaps = 1/187 (1%)
Strand=Plus/Minus
Query 451273 TAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTAC 451332
||| ||||| ||||| || || || ||||| ||| || | || || |||||
Sbjct 763538 TAAGATGAAGGAAACTGCCGAGGCTTACCTTGGTGAAAAAGTGACGCAGGCCGTCATTAC 763479
Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392
|||||| ||||| || || ||||| || || || ||||| || ||||| || | ||||||
Sbjct 763478 TGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCAACCAAGGATGCCGGTCGTATTGC 763419
Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452
||| | | || || || || ||||| ||||| || || ||||| || || ||||| |
Sbjct 763418 TGGCCTTGAAGTGCTGCGTATCATTAACGAACCAACCGCTGCTGCCCTTGCCTATGG-CA 763360
Query 451453 AGGAAAA 451459
||||||
Sbjct 763359 TGGAAAA 763353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975669417618980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |