Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq14 174 1e-37 seq224 116 3e-20 seq8 116 3e-20 seq131 111 1e-18 seq1429 87.8 1e-11 seq1427 87.8 1e-11 seq36 87.8 1e-11 seq40 86.0 5e-11 >seq14 Length=1523015 Score = 174 bits (192), Expect = 1e-37 Identities = 561/866 (65%), Gaps = 6/866 (1%) Strand=Plus/Plus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 |||| | || ||||||| |||||||| ||||| | | || || || || || || | Sbjct 1235795 AATCGGTACCCTCGAACAGAGAATCAATCTCAATGCTGGCCTGGGTGGACGAGGAGAGGG 1235854 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 517968 ||| || || || || || || || | || | || | || ||| ||| | | Sbjct 1235855 TACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGCAGAGCAC--GCTTGTTGGTGGT 1235912 Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028 || ||| | || | || | |||||| || | ||| | || || ||||| || || Sbjct 1235913 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGGGTCACTAGACGGTTGTC 1235972 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||||| ||||| || | | |||| || | ||||| | | || | ||| | || || Sbjct 1235973 GAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCCGTC 1236032 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 || | |||| || | ||||| ||| || ||||||| ||| ||||| || ||||| Sbjct 1236033 ATCGATCGACAGAATGGACACATCGAAGGTACCGCCACCCAGATCGAAAATGAGCACATT 1236092 Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 || | || || || || ||||| || | |||||| || || || || || Sbjct 1236093 ACGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCAGCGGCCGTCGGCTCGTT 1236152 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 || || | || ||||| | || ||||| | || || || || || || || | || Sbjct 1236153 GATGATACGCAGCACATTCAATCCGGCAATGGTACCGGCGTCCTTGGTCGCCTGACGCTG 1236212 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 || ||||| || || || || ||||| || ||||||| || || || || | || Sbjct 1236213 CGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCATTGGTCACCGTCTTGCCCAGGTA 1236272 Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388 || || || | |||||||| | || | ||| || || || | || |||||| | Sbjct 1236273 CGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGAAGA 1236331 Query 518389 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 518447 | ||| |||| | || | || |||| | || || | | ||| | | | Sbjct 1236332 AGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTGGGCTTGCCATCTACACTGACCA 1236391 Query 518448 CTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 518507 | | || ||||||| ||||| || || || ||| || | ||| | | ||| | Sbjct 1236392 CGTCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATCCTCAAACTTGCGACCGA 1236451 Query 518508 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTG 518567 | | || || ||||| || || || | ||||| || || || | || | ||||| | Sbjct 1236452 TCAGACGCTTGGCATCGAAGATCGTTTGAGTTGGGTTCATCGCCACCTGGTTCTTGGCGG 1236511 Query 518568 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 518627 |||| ||||||| | | || || || || || | |||||| ||||| || || ||||||| Sbjct 1236512 CATCACCAATCAAACGCTCCGTGTCCGTGAAGGCAACATAGGATGGTGTGGTACGATTAC 1236571 Query 518628 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687 | || || || ||||| || || || || |||| || | ||||| || ||| | | Sbjct 1236572 CCTGGTCGTTGGCAATGATCTCGACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGG 1236631 Query 518688 TTGTTCCTAAATCAATACCAATAGCA 518713 |||| || ||||||||||||| |||| Sbjct 1236632 TTGTGCCCAAATCAATACCAACAGCA 1236657 >seq224 Length=190040 Score = 116 bits (128), Expect = 3e-20 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| |||||||| |||||||| ||||| || | || || | ||| |||||| Sbjct 57656 CCATAGGCAAGGGCAGCAGCGGTTGGTTCGTTAATGATACGCAGCACTTCAAGGCCAGCA 57715 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || || || || | || | ||||||||| || || ||||||||| Sbjct 57716 ATACGACCGGCATCCTTGGTTGCCTGACGCTGGGCATCGTTAAAGTAAGCCGGAACAGTA 57775 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 || ||||| | || |||| || ||||| ||||| || |||| ||||| |||| Sbjct 57776 ATGACGGCCTGCGTCACTTTTTCACCAAGGTAAGCCTCGGCAGTTTCCTTCATCTTACCC 57835 Query 518357 AAAA 518360 |||| Sbjct 57836 AAAA 57839 >seq8 Length=1553183 Score = 116 bits (128), Expect = 3e-20 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| |||||||| |||||||| ||||| || | || || | ||| |||||| Sbjct 763362 CCATAGGCAAGGGCAGCAGCGGTTGGTTCGTTAATGATACGCAGCACTTCAAGGCCAGCA 763421 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || || || || | || | ||||||||| || || ||||||||| Sbjct 763422 ATACGACCGGCATCCTTGGTTGCCTGACGCTGGGCATCGTTAAAGTAAGCCGGAACAGTA 763481 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 || ||||| | || |||| || ||||| ||||| || |||| ||||| |||| Sbjct 763482 ATGACGGCCTGCGTCACTTTTTCACCAAGGTAAGCCTCGGCAGTTTCCTTCATCTTACCC 763541 Query 518357 AAAA 518360 |||| Sbjct 763542 AAAA 763545 >seq131 Length=332952 Score = 111 bits (122), Expect = 1e-18 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 870790 AAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACA 870849 |||| | || | || |||| ||||| || ||||| || || | |||||| |||| || Sbjct 235438 AAAGCGAGTTTTGGTGGATTTCTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGTCA 235379 Query 870850 TTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGA-CACG 870908 || | || || |||||||| ||||| ||||| | | ||||| | | || | |||| Sbjct 235378 CCTACGCTCTACCATTATTGGCGAATCAATTTGCCGCTTGCTAGAATTTT-TGAAGCACG 235320 Query 870909 ATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 |||| |||||| |||||| | ||||||||||| || ||||| |||||||||||||| Sbjct 235319 ATGTGATTCGTATAAATCATCTTGGTGATTGGGGCACACAATTTGGTATGTTAATTGC 235262 >seq1429 Length=2652 Score = 87.8 bits (96), Expect = 1e-11 Identities = 192/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG- 518082 || ||||| || || || ||||| | || | ||| | || || | || | ||| || Sbjct 512 TTGTCAAAGTCCTCGCCACCCAAGTGGGTGTCTCCGGCAGTGGCGCGCACCTCGAACAGC 571 Query 518083 --TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 ||| || || | | || || || ||||| ||| || ||||||| ||| || || Sbjct 572 GATCCCTCGTCGATGGTCAGAATAGAGACATCGAAGGTGCCGCCACCCAGATCGAAGATC 631 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || ||||| ||| | | || || || || ||||| || | |||||| || ||| Sbjct 632 AGCACATTGCGCTCTCCCTTGAGATTCTTGTCCAGGCCATAGGCCAGAGCAGCCGCCGTT 691 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || || || | || || || || || ||||| ||| |||||||||||||| Sbjct 692 GGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGCAATGGCTCCAGCATCTTTAGTGGCC 751 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 || | || || ||||| || || || || || || || || || || Sbjct 752 TGGCGCTGGGAGTCGTTGAAGTACGCTGGCACTGTGATGACTGCGTC 798 >seq1427 Length=2652 Score = 87.8 bits (96), Expect = 1e-11 Identities = 192/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG- 518082 || ||||| || || || ||||| | || | ||| | || || | || | ||| || Sbjct 512 TTGTCAAAGTCCTCGCCACCCAAGTGGGTGTCTCCGGCAGTGGCGCGCACCTCGAACAGC 571 Query 518083 --TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 ||| || || | | || || || ||||| ||| || ||||||| ||| || || Sbjct 572 GATCCCTCGTCGATGGTCAGAATAGAGACATCGAAGGTGCCGCCACCCAGATCGAAGATC 631 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || ||||| ||| | | || || || || ||||| || | |||||| || ||| Sbjct 632 AGCACATTGCGCTCTCCCTTGAGATTCTTGTCCAGGCCATAGGCCAGAGCAGCCGCCGTT 691 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || || || | || || || || || ||||| ||| |||||||||||||| Sbjct 692 GGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGCAATGGCTCCAGCATCTTTAGTGGCC 751 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 || | || || ||||| || || || || || || || || || || Sbjct 752 TGGCGCTGGGAGTCGTTGAAGTACGCTGGCACTGTGATGACTGCGTC 798 >seq36 Length=774725 Score = 87.8 bits (96), Expect = 1e-11 Identities = 192/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG- 518082 || ||||| || || || ||||| | || | ||| | || || | || | ||| || Sbjct 638943 TTGTCAAAGTCCTCGCCACCCAAGTGGGTGTCTCCGGCAGTGGCGCGCACCTCGAACAGC 639002 Query 518083 --TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 ||| || || | | || || || ||||| ||| || ||||||| ||| || || Sbjct 639003 GATCCCTCGTCGATGGTCAGAATAGAGACATCGAAGGTGCCGCCACCCAGATCGAAGATC 639062 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || ||||| ||| | | || || || || ||||| || | |||||| || ||| Sbjct 639063 AGCACATTGCGCTCTCCCTTGAGATTCTTGTCCAGGCCATAGGCCAGAGCAGCCGCCGTT 639122 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || || || | || || || || || ||||| ||| |||||||||||||| Sbjct 639123 GGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGCAATGGCTCCAGCATCTTTAGTGGCC 639182 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 || | || || ||||| || || || || || || || || || || Sbjct 639183 TGGCGCTGGGAGTCGTTGAAGTACGCTGGCACTGTGATGACTGCGTC 639229 Score = 87.8 bits (96), Expect = 1e-11 Identities = 192/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG- 518082 || ||||| || || || ||||| | || | ||| | || || | || | ||| || Sbjct 641824 TTGTCAAAGTCCTCGCCACCCAAGTGGGTGTCTCCGGCAGTGGCGCGCACCTCGAACAGC 641765 Query 518083 --TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 ||| || || | | || || || ||||| ||| || ||||||| ||| || || Sbjct 641764 GATCCCTCGTCGATGGTCAGAATAGAGACATCGAAGGTGCCGCCACCCAGATCGAAGATC 641705 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || ||||| ||| | | || || || || ||||| || | |||||| || ||| Sbjct 641704 AGCACATTGCGCTCTCCCTTGAGATTCTTGTCCAGGCCATAGGCCAGAGCAGCCGCCGTT 641645 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || || || | || || || || || ||||| ||| |||||||||||||| Sbjct 641644 GGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGCAATGGCTCCAGCATCTTTAGTGGCC 641585 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 || | || || ||||| || || || || || || || || || || Sbjct 641584 TGGCGCTGGGAGTCGTTGAAGTACGCTGGCACTGTGATGACTGCGTC 641538 >seq40 Length=3524470 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 367000 GCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTAT 367059 ||||| || ||||||||||||||||| | || || ||||||||| |||| | |||| | Sbjct 2547463 GCCACTATTGCATTTGGTATGGGTATCGACAAGCCCGATGTTAGATTTGTCCTGCATTTT 2547404 Query 367060 GGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGGA 367119 ||| || ||||||||| |||||||| || |||| | ||||| || |||||| Sbjct 2547403 TCGCTTCCGAAATCTATTGAAGGCTATTATCAGGAGGCTGGTCGGGCAGGGCGAGATGGA 2547344 Query 367120 GA 367121 || Sbjct 2547343 GA 2547342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780726378926110