Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq22 114 2e-20
seq111 113 6e-20
seq328 111 2e-19
seq134 95.1 2e-14
>seq22
Length=1073832
Score = 114 bits (126), Expect = 2e-20
Identities = 254/373 (68%), Gaps = 6/373 (2%)
Strand=Plus/Minus
Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940
|| ||| ||||||||||| ||||| || || || |||||| | ||| ||| || ||
Sbjct 979017 CTGACGGTCAAAGCGACCCGGGCGCAGAAGAGCAGGATCAAGCACGTCAGGGCGGTTGGT 978958
Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTG 16000
|| || || | | | ||| | | | ||||| || ||||| || || | |||
Sbjct 978957 GGCCGCAATCAGGATCACGCCTTCGTTGCTTTCAAACCCGTCCATTTCAACCAGCATCTG 978898
Query 16001 GTTAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTC 16059
||| | ||||| || ||||| ||||| | || | | || |||| || || |
Sbjct 978897 GTTCAGGGTTTGCTCGCGTTCGTCATTGCCACCGCCCATC-CCTGCACCACGATGGCGGC 978839
Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGA-TTTTCGCGAGCGACTTCA 16118
| ||||| ||||| || |||||||||| |||||||| | |||| | | | ||
Sbjct 978838 CAACGGCGTCAATTTCGTCAATGAAGATAATGCATGGGGCAGCTTTCTTGCCCTGC-TCG 978780
Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178
|| | || || ||||| ||||| ||||| |||||||| || ||||||| | ||
Sbjct 978779 AACATGTCGCGCACACGGGAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAACCG 978720
Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237
||| || | || ||| || ||||| | ||||||||| ||||| ||||| || || || ||
Sbjct 978719 GAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCGATGGCACGGGCCAGCAGGGTTTT 978661
Query 16238 ACCCGTACCTGGC 16250
|| || || |||
Sbjct 978660 CCCTGTTCCCGGC 978648
>seq111
Length=362587
Score = 113 bits (124), Expect = 6e-20
Identities = 291/441 (66%), Gaps = 2/441 (0%)
Strand=Plus/Minus
Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232
|||||| ||||| | | || ||||| || || || ||||||||| || |||
Sbjct 244821 CTTTGCCGAGCGTATTATTGCCTTTGCAGCCGTGGAAGGAATCTTCTTCAGCGGCAGCTT 244762
Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292
| | || | |||||| |||||||| || |||||||| ||||| ||||||||||||
Sbjct 244761 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGA 244702
Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG-GAACTTTTCAAATTAT 102351
||| |||||||||||||| || |||||| || ||||||||| | | || | |
Sbjct 244701 GCTGATCTCTCGTGACGAAGGTCTCCACTGCGACTTTGCGGTGCTCATGTACCAGCATCT 244642
Query 102352 TGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTG 102411
| | | |||| | ||| ||| | || ||| ||| || || || || |
Sbjct 244641 GGTGCAGCGTCCCAA-GCGGGAGCGCATTATTGAGATCATTAGGGATGCTGTCGAAATCG 244583
Query 102412 AGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGA 102471
|| | | ||| | || ||||| || ||| | | || || ||||| | | |
Sbjct 244582 AGCAAGAGTTCCTCACCGAAGCCCTGCCCTGCAATTTGATTGGCATGAACTGCGTCCTCA 244523
Query 102472 TGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA 102531
||||| | || ||||| | ||| | ||| | || ||| | || |||| ||| | |
Sbjct 244522 TGTCCCAGTACATTGAATTTGTCGCCGATCGTCTGCTGATGGAGCTCGGTGTGGGTAAGA 244463
Query 102532 TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAA 102591
| | ||| | |||||||| || |||||||| | || || ||||| |||||||
Sbjct 244462 TCTACAACACTAAGAATCCCTTCAGTTTCATGGATATGATCTCTCTGGACGGAAAGACAA 244403
Query 102592 ACTTCTTCGAAAAGAGGGTTG 102612
||||||| || || | |||||
Sbjct 244402 ACTTCTTTGAGAAAAAGGTTG 244382
>seq328
Length=165906
Score = 111 bits (122), Expect = 2e-19
Identities = 372/572 (65%), Gaps = 9/572 (2%)
Strand=Plus/Plus
Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145
|| ||||| || | ||| | |||||||| ||||| |||||||| | ||||| | | |
Sbjct 106123 CGGGATCTTTTTTATGCTTTATGGATTCCCGATCTTTTCATGAAACGGGTTGAAGCAAAT 106182
Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205
| || ||||| | | |||||| | || || || || |||| ||| ||
Sbjct 106183 GAAAACTGGTCGTTGATGTGTCCACATAAATGTCCTGGACTTCAAGATGTTTGGGGCGAA 106242
Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCA 112265
| ||||| || || || || ||| |||| | || || | | || ||| |
Sbjct 106243 AAATTTGAGCAACTTTATGTCAAATATGAGCAAGAGGGACGTGCTAATCGAACAGTGAAA 106302
Query 112266 GCTGCCGATGTG-TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATAT 112324
||| | | || ||| || ||| | | || ||| || ||||||| ||||| ||
Sbjct 106303 GCT-CAGTCGTTATGGTTTGCCATTATAGAATCGCAAGTTGAAACTGGTAACCCATACAT 106361
Query 112325 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 112384
||||| || || ||||||| |||||| |||||| | ||| | || || || |
Sbjct 106362 GCTTTTTAAGGATTCCTGTAATAGAAAGAGCAATCAACAAAATGTTGGCACTATTAAATG 106421
Query 112385 TTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 112444
|| | ||||||||||| | || | | | ||||||| ||||| || ||
Sbjct 106422 CAGTAATTTATGTACAGAAATTGTTGAGTACTCTGCACCTGATGAGATCGCTGTTTGCAA 106481
Query 112445 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 112504
| || ||||| || || || || ||| ||||| ||| |||||||||| |
Sbjct 106482 TTTAGCTTCAATTGCACTTAACATGTTTGTAACACCAGA---AAAAACATTTGATTTCAA 106538
Query 112505 AAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAA 112564
|||| | | || || || |||||||| | ||||| || || | | | || || | ||
Sbjct 106539 AAAATTAAAAGATGTAACCAAAACTGTTGCTAAAAATCTTAATAAAATAATAGACATCAA 106598
Query 112565 TTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 112622
| ||||||| ||| ||| ||| ||||| ||| | || || |||||||||||| |
Sbjct 106599 CTATTACCCC-TTGCCAGAA-GCTAAGAAATCCAATTTAAGGCATCGTCCAATTGGTATA 106656
Query 112623 GGTGTCCAAGGTCTCGCGGATGTATTCATTCT 112654
||||| |||||| |||| || | || |||||
Sbjct 106657 GGTGTTCAAGGTTTCGCTGACGCTTTAATTCT 106688
>seq134
Length=322322
Score = 95.1 bits (104), Expect = 2e-14
Identities = 178/262 (68%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 176021 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 176080
||||| || ||| | | || ||||| |||||||| | |||||| || | ||||| |||
Sbjct 20635 TCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 20694
Query 176081 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 176140
|| || || | ||||| | |||| || || || || | ||| || || || |||
Sbjct 20695 TTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAAACCTCGCCG 20754
Query 176141 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 176200
|||||||| || | |||| || || | | | || ||| ||||| |||| ||| |
Sbjct 20755 TGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCTCGCGC 20814
Query 176201 TTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCC 176260
||| || | ||| || | | |||| |||||||| || |||||||| ||||||
Sbjct 20815 TTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGGCCATCC 20874
Query 176261 GCCATGTGTGCGATAGAACGCT 176282
||| | | ||| || ||||
Sbjct 20875 ACCAGGCTGGGGATGGAGCGCT 20896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620727385793200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |