Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq22 114 2e-20 seq111 113 6e-20 seq328 111 2e-19 seq134 95.1 2e-14 >seq22 Length=1073832 Score = 114 bits (126), Expect = 2e-20 Identities = 254/373 (68%), Gaps = 6/373 (2%) Strand=Plus/Minus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||| ||||||||||| ||||| || || || |||||| | ||| ||| || || Sbjct 979017 CTGACGGTCAAAGCGACCCGGGCGCAGAAGAGCAGGATCAAGCACGTCAGGGCGGTTGGT 978958 Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTG 16000 || || || | | | ||| | | | ||||| || ||||| || || | ||| Sbjct 978957 GGCCGCAATCAGGATCACGCCTTCGTTGCTTTCAAACCCGTCCATTTCAACCAGCATCTG 978898 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTC 16059 ||| | ||||| || ||||| ||||| | || | | || |||| || || | Sbjct 978897 GTTCAGGGTTTGCTCGCGTTCGTCATTGCCACCGCCCATC-CCTGCACCACGATGGCGGC 978839 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGA-TTTTCGCGAGCGACTTCA 16118 | ||||| ||||| || |||||||||| |||||||| | |||| | | | || Sbjct 978838 CAACGGCGTCAATTTCGTCAATGAAGATAATGCATGGGGCAGCTTTCTTGCCCTGC-TCG 978780 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || | || || ||||| ||||| ||||| |||||||| || ||||||| | || Sbjct 978779 AACATGTCGCGCACACGGGAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAACCG 978720 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 ||| || | || ||| || ||||| | ||||||||| ||||| ||||| || || || || Sbjct 978719 GAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCGATGGCACGGGCCAGCAGGGTTTT 978661 Query 16238 ACCCGTACCTGGC 16250 || || || ||| Sbjct 978660 CCCTGTTCCCGGC 978648 >seq111 Length=362587 Score = 113 bits (124), Expect = 6e-20 Identities = 291/441 (66%), Gaps = 2/441 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 |||||| ||||| | | || ||||| || || || ||||||||| || ||| Sbjct 244821 CTTTGCCGAGCGTATTATTGCCTTTGCAGCCGTGGAAGGAATCTTCTTCAGCGGCAGCTT 244762 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 | | || | |||||| |||||||| || |||||||| ||||| |||||||||||| Sbjct 244761 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGA 244702 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG-GAACTTTTCAAATTAT 102351 ||| |||||||||||||| || |||||| || ||||||||| | | || | | Sbjct 244701 GCTGATCTCTCGTGACGAAGGTCTCCACTGCGACTTTGCGGTGCTCATGTACCAGCATCT 244642 Query 102352 TGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTG 102411 | | | |||| | ||| ||| | || ||| ||| || || || || | Sbjct 244641 GGTGCAGCGTCCCAA-GCGGGAGCGCATTATTGAGATCATTAGGGATGCTGTCGAAATCG 244583 Query 102412 AGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGA 102471 || | | ||| | || ||||| || ||| | | || || ||||| | | | Sbjct 244582 AGCAAGAGTTCCTCACCGAAGCCCTGCCCTGCAATTTGATTGGCATGAACTGCGTCCTCA 244523 Query 102472 TGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA 102531 ||||| | || ||||| | ||| | ||| | || ||| | || |||| ||| | | Sbjct 244522 TGTCCCAGTACATTGAATTTGTCGCCGATCGTCTGCTGATGGAGCTCGGTGTGGGTAAGA 244463 Query 102532 TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAA 102591 | | ||| | |||||||| || |||||||| | || || ||||| ||||||| Sbjct 244462 TCTACAACACTAAGAATCCCTTCAGTTTCATGGATATGATCTCTCTGGACGGAAAGACAA 244403 Query 102592 ACTTCTTCGAAAAGAGGGTTG 102612 ||||||| || || | ||||| Sbjct 244402 ACTTCTTTGAGAAAAAGGTTG 244382 >seq328 Length=165906 Score = 111 bits (122), Expect = 2e-19 Identities = 372/572 (65%), Gaps = 9/572 (2%) Strand=Plus/Plus Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || ||||| || | ||| | |||||||| ||||| |||||||| | ||||| | | | Sbjct 106123 CGGGATCTTTTTTATGCTTTATGGATTCCCGATCTTTTCATGAAACGGGTTGAAGCAAAT 106182 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 | || ||||| | | |||||| | || || || || |||| ||| || Sbjct 106183 GAAAACTGGTCGTTGATGTGTCCACATAAATGTCCTGGACTTCAAGATGTTTGGGGCGAA 106242 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCA 112265 | ||||| || || || || ||| |||| | || || | | || ||| | Sbjct 106243 AAATTTGAGCAACTTTATGTCAAATATGAGCAAGAGGGACGTGCTAATCGAACAGTGAAA 106302 Query 112266 GCTGCCGATGTG-TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATAT 112324 ||| | | || ||| || ||| | | || ||| || ||||||| ||||| || Sbjct 106303 GCT-CAGTCGTTATGGTTTGCCATTATAGAATCGCAAGTTGAAACTGGTAACCCATACAT 106361 Query 112325 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 112384 ||||| || || ||||||| |||||| |||||| | ||| | || || || | Sbjct 106362 GCTTTTTAAGGATTCCTGTAATAGAAAGAGCAATCAACAAAATGTTGGCACTATTAAATG 106421 Query 112385 TTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 112444 || | ||||||||||| | || | | | ||||||| ||||| || || Sbjct 106422 CAGTAATTTATGTACAGAAATTGTTGAGTACTCTGCACCTGATGAGATCGCTGTTTGCAA 106481 Query 112445 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 112504 | || ||||| || || || || ||| ||||| ||| |||||||||| | Sbjct 106482 TTTAGCTTCAATTGCACTTAACATGTTTGTAACACCAGA---AAAAACATTTGATTTCAA 106538 Query 112505 AAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAA 112564 |||| | | || || || |||||||| | ||||| || || | | | || || | || Sbjct 106539 AAAATTAAAAGATGTAACCAAAACTGTTGCTAAAAATCTTAATAAAATAATAGACATCAA 106598 Query 112565 TTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 112622 | ||||||| ||| ||| ||| ||||| ||| | || || |||||||||||| | Sbjct 106599 CTATTACCCC-TTGCCAGAA-GCTAAGAAATCCAATTTAAGGCATCGTCCAATTGGTATA 106656 Query 112623 GGTGTCCAAGGTCTCGCGGATGTATTCATTCT 112654 ||||| |||||| |||| || | || ||||| Sbjct 106657 GGTGTTCAAGGTTTCGCTGACGCTTTAATTCT 106688 >seq134 Length=322322 Score = 95.1 bits (104), Expect = 2e-14 Identities = 178/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 176021 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 176080 ||||| || ||| | | || ||||| |||||||| | |||||| || | ||||| ||| Sbjct 20635 TCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 20694 Query 176081 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 176140 || || || | ||||| | |||| || || || || | ||| || || || ||| Sbjct 20695 TTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAAACCTCGCCG 20754 Query 176141 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 176200 |||||||| || | |||| || || | | | || ||| ||||| |||| ||| | Sbjct 20755 TGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCTCGCGC 20814 Query 176201 TTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCC 176260 ||| || | ||| || | | |||| |||||||| || |||||||| |||||| Sbjct 20815 TTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGGCCATCC 20874 Query 176261 GCCATGTGTGCGATAGAACGCT 176282 ||| | | ||| || |||| Sbjct 20875 ACCAGGCTGGGGATGGAGCGCT 20896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620727385793200