Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq134 89.7 6e-13 seq8 86.0 7e-12 >seq134 Length=322322 Score = 89.7 bits (98), Expect = 6e-13 Identities = 179/263 (68%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 167539 TCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTTA 167598 |||||||| ||| | | || ||||| || ||||| | ||||| || | |||||||| Sbjct 20635 TCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 20694 Query 167599 TTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTT-TCAGCGAGGGAAACTTCGCC 167657 ||||| || || | | ||||| || ||||| || || | ||||||||| ||||| Sbjct 20695 TTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTG-GAGGGAAACCTCGCC 20753 Query 167658 GTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCATC 167717 ||||||||| || | | |||||||| | | | || ||| || ||||||| ||| Sbjct 20754 GTGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCTCGCG 20813 Query 167718 TTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGACCATC 167777 ||| || | ||| || | |||| |||||||| || || ||||| ||||| Sbjct 20814 CTTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGGCCATC 20873 Query 167778 TGCCACGTGAGCAATTGAGCGCT 167800 ||| | | || ||||||| Sbjct 20874 CACCAGGCTGGGGATGGAGCGCT 20896 >seq8 Length=1553183 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 40209 CCATCGTCCAATCCGCCCGTGTTTCCTATGGCGACGGTACC--AAAACCACCCGTGGAGA 40266 |||| || || | || |||||||||||||| ||||||| ||| | | | ||| Sbjct 1364656 CCATTGTGCAGGCGGCGCGTGTTTCCTATGGGCGCGGTACCCGCAAAGTATCAGAGGATG 1364715 Query 40267 CCGTGGGCTCATCCGATATCTCCTTAGGCACTGGCATACGACCCCTTTTGAAATGGTCGA 40326 | ||||| ||||| ||||| | ||||| | ||| | | || ||||||||| ||| Sbjct 1364716 C--GGGGCTTATCCGCTATCTGATGCGGCACCGTCATTCCTCGCCGTTTGAAATGTGCGA 1364773 Query 40327 TTTCAAGTTTCACATCAAAATGCCCATCTACATCGCACGACAGCACCTTCGGCACCGCAC 40386 |||| |||||| ||||| | || || | ||| || || ||| |||| || |||| Sbjct 1364774 GATCAAATTTCACGTCAAACTACCGATTTTCATTGCTCGGCAGTGGATTCGTCATCGCAT 1364833 Query 40387 CGCCAGTGTGAATGAGTTGTCTGCTCGTTACTC 40419 ||||| ||||| || | ||||| || || || Sbjct 1364834 GGCCAGCGTGAACGAATATTCTGCCCGCTATTC 1364866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588961754143000