Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq328 98.7 1e-15 >seq328 Length=165906 Score = 98.7 bits (108), Expect = 1e-15 Identities = 221/328 (67%), Gaps = 7/328 (2%) Strand=Plus/Minus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || |||| |||||||||||| | |||||| || | || | | ||| || || || Sbjct 106676 TCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGGATTTCTTAGCT 106617 Query 106340 GTCT--CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 106397 ||| ||| ||| ||| | || |||| || | | || |||||||| | |||| | | Sbjct 106616 -TCTGGCAAGGGG-TAATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAACAGTTT 106559 Query 106398 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTG 106457 | || | || | | ||||| ||||||| || | ||| | ||| || | Sbjct 106558 TGGTTACATCTTTTAATTTTTTGAAATCAAATGTTT---TTTCTGGTGTTACAAACATGT 106502 Query 106458 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 106517 ||| || ||||| || |||||||||||||| ||||||| | | |||||| | || Sbjct 106501 TAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGTACTCAACAA 106442 Query 106518 TTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGT 106577 |||||||||| || || | ||||| || || | ||| | ||| || |||||| | | Sbjct 106441 TTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTAT 106382 Query 106578 TGCACGCATCCTTGTAGAGCATGTAGGG 106605 | || | |||||| | |||||||| || Sbjct 106381 TACAGGAATCCTTAAAAAGCATGTATGG 106354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966529839400