Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq23 136 9e-27
seq234 131 4e-25
seq35 114 3e-20
>seq23
Length=1278451
Score = 136 bits (150), Expect = 9e-27
Identities = 153/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||||||||| || || || ||||| || | |||||| | ||||| || ||||||
Sbjct 1264115 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCCAGCTGC 1264174
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || |||||||| || || || |||||||| || || || || ||||| || || ||
Sbjct 1264175 TTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 1264234
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| ||||||||||||||||| || || || || | ||| | || || || |||
Sbjct 1264235 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTC 1264294
Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142
|| ||||| || || | |||||||
Sbjct 1264295 AAGGTTTTCACAAAGATCTGCATTT 1264319
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||||||||| || || || ||||| || | |||||| | ||||| || ||||||
Sbjct 1263431 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCCAGCTGC 1263490
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || |||||||| || || || |||||||| || || || || ||||| || || ||
Sbjct 1263491 TTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 1263550
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| ||||||||||||||||| || || || || ||||| | || || || |||
Sbjct 1263551 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTC 1263610
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| ||| || || || | |||||
Sbjct 1263611 AGAGTCTTCACAAAGATCTGCAT 1263633
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||||||||| || || || ||||| || | |||||| | ||||| || ||||||
Sbjct 1263659 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCCAGCTGC 1263718
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || |||||||| || || || |||||||| || || || || ||||| || || ||
Sbjct 1263719 TTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 1263778
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| ||||||||||||||||| || || || || ||||| | || || || |||
Sbjct 1263779 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTC 1263838
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| ||| || || || | |||||
Sbjct 1263839 AGAGTCTTCACAAAGATCTGCAT 1263861
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||||||||| || || || ||||| || | |||||| | ||||| || ||||||
Sbjct 1263887 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCCAGCTGC 1263946
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || |||||||| || || || |||||||| || || || || ||||| || || ||
Sbjct 1263947 TTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 1264006
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| ||||||||||||||||| || || || || ||||| | || || || |||
Sbjct 1264007 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTC 1264066
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| ||| || || || | |||||
Sbjct 1264067 AGAGTCTTCACAAAGATCTGCAT 1264089
Score = 127 bits (140), Expect = 5e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||| ||||| || || || ||||| || | |||||| | ||||| || ||||||
Sbjct 1263203 TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCCAGCTGC 1263262
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || |||||||| || || || |||||||| || || || || ||||| || || ||
Sbjct 1263263 TTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 1263322
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| ||||||||||||||||| || || || || ||||| | || || || |||
Sbjct 1263323 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTC 1263382
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| ||| || || || | |||||
Sbjct 1263383 AGAGTCTTCACAAAGATCTGCAT 1263405
>seq234
Length=227530
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
|||||||| || ||||| || ||||| | || |||| |||||||| | || || ||
Sbjct 9939 GTGGACTCCTTCTGAATGTTATAATCAGATAGTGTTCGGCCATCTTCCAATTGTTTGCCA 9998
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
|||||||| | |||||||| ||||||||||| ||||||||||| ||||| || |||
Sbjct 9999 GCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 10058
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
|| || || ||||| ||||| ||| || ||||| || | ||||| || || | ||
Sbjct 10059 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTAAGGGTC 10118
Query 195124 TTTACGAACACTTGCAT 195140
||||| || | |||||
Sbjct 10119 TTTACAAAGATCTGCAT 10135
>seq35
Length=832945
Score = 114 bits (126), Expect = 3e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
||| ||||| || || || ||||| |||| | ||| | || || || |||||||| ||
Sbjct 773680 AGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCC 773739
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062
||||| || | || || || ||||| |||||||| || ||||| || || || |||
Sbjct 773740 GGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTT 773799
Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
||| ||||| ||||||||||| || || || ||||| | ||||| || |||| ||
Sbjct 773800 GACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 773859
Query 195123 TTTTACGAACACTTGCAT 195140
|| ||||| | |||||
Sbjct 773860 CTTCACGAAGATCTGCAT 773877
Score = 114 bits (126), Expect = 3e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
||| ||||| || || || ||||| |||| | ||| | || || || |||||||| ||
Sbjct 773908 AGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCC 773967
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062
||||| || | || || || ||||| |||||||| || ||||| || || || |||
Sbjct 773968 GGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTT 774027
Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
||| ||||| ||||||||||| || || || ||||| | ||||| || |||| ||
Sbjct 774028 GACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 774087
Query 195123 TTTTACGAACACTTGCAT 195140
|| ||||| | |||||
Sbjct 774088 CTTCACGAAGATCTGCAT 774105
Score = 114 bits (126), Expect = 3e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
||| ||||| || || || ||||| |||| | ||| | || || || |||||||| ||
Sbjct 774136 AGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCC 774195
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062
||||| || | || || || ||||| |||||||| || ||||| || || || |||
Sbjct 774196 GGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTT 774255
Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
||| ||||| ||||||||||| || || || ||||| | ||||| || |||| ||
Sbjct 774256 GACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGTCTTGCCAGTCAGGGT 774315
Query 195123 TTTTACGAACACTTGCAT 195140
|| ||||| | |||||
Sbjct 774316 CTTCACGAAGATCTGCAT 774333
Score = 109 bits (120), Expect = 1e-18
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
||| ||||| || || || ||||| |||| | ||| | || || || |||||||| ||
Sbjct 773452 AGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCC 773511
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062
|| ||||| | || || || ||||| |||||||| || ||||| || || || |||
Sbjct 773512 GGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTT 773571
Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
||| ||||| ||||||||||| || || || | ||| | ||||| || |||| ||
Sbjct 773572 GACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGT 773631
Query 195123 TTTTACGAACACTTGCAT 195140
|| ||||| | |||||
Sbjct 773632 CTTCACGAAGATCTGCAT 773649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109454093524145
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |