Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq23 118 7e-22
seq6 105 4e-18
seq35 96.9 2e-15
seq234 93.3 3e-14
>seq23
Length=1278451
Score = 118 bits (130), Expect = 7e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | ||| || ||||| ||||| ||||| ||||| | || |||| |||
Sbjct 1263425 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1263484
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || ||||| || || || || ||||||||| | || | |||||||||||
Sbjct 1263485 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1263544
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| || ||| | || | || | |||||| || | ||| ||||||||
Sbjct 1263545 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTG 1263604
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || ||||||||||||||||||||||||
Sbjct 1263605 CCGGTCAGAGTCTTCACAAAGATCTGCATA 1263634
Score = 118 bits (130), Expect = 7e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | ||| || ||||| ||||| ||||| ||||| | || |||| |||
Sbjct 1263653 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1263712
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || ||||| || || || || ||||||||| | || | |||||||||||
Sbjct 1263713 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1263772
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| || ||| | || | || | |||||| || | ||| ||||||||
Sbjct 1263773 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTG 1263832
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || ||||||||||||||||||||||||
Sbjct 1263833 CCGGTCAGAGTCTTCACAAAGATCTGCATA 1263862
Score = 118 bits (130), Expect = 7e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | ||| || ||||| ||||| ||||| ||||| | || |||| |||
Sbjct 1263881 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1263940
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || ||||| || || || || ||||||||| | || | |||||||||||
Sbjct 1263941 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1264000
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| || ||| | || | || | |||||| || | ||| ||||||||
Sbjct 1264001 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTG 1264060
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || ||||||||||||||||||||||||
Sbjct 1264061 CCGGTCAGAGTCTTCACAAAGATCTGCATA 1264090
Score = 116 bits (128), Expect = 2e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| ||||| | || |||| |||||||| || ||||| ||
Sbjct 1263215 TCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAG 1263274
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||||||| | || | ||||||||||| ||||| || |||
Sbjct 1263275 ATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 1263334
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | |||||| || | ||| |||||||| || || ||||||||||||
Sbjct 1263335 TCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACA 1263394
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 1263395 AAGATCTGCATA 1263406
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | ||| || ||||| ||||| ||||| ||||| | || |||| |||
Sbjct 1264109 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1264168
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || ||||| || || || || ||||||||| | || | |||||||||||
Sbjct 1264169 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1264228
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| || ||| | || | || | |||||| || | ||| ||||||||
Sbjct 1264229 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGATGGTTTTG 1264288
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| || | || ||||||||||||||||| ||
Sbjct 1264289 CCAGTCAAGGTTTTCACAAAGATCTGCATTTT 1264320
>seq6
Length=3104374
Score = 105 bits (116), Expect = 4e-18
Identities = 154/216 (71%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || ||||| ||||| ||||| || || | || |||| |||
Sbjct 2898462 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 2898403
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || ||||| || || || || ||||| ||| | || | |||||||||||
Sbjct 2898402 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 2898343
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||||| || || || | ||| || ||| || || | ||| ||||| |
Sbjct 2898342 ATCTTAGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCT 2898285
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986
| || |||||||| |||||||| || ||||| ||||
Sbjct 2898284 TGCCAGTGAGAGTTTTCACAAAAATTTGCATTTTCG 2898249
>seq35
Length=832945
Score = 96.9 bits (106), Expect = 2e-15
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || | | ||| | || |||||||| || ||||| ||
Sbjct 774143 TCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAA 774202
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || ||||| ||| | || | ||||||||||| ||||| ||||| ||
Sbjct 774203 ATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--AT 774260
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | || || ||| || |||| ||||||||| || || || || |||||||
Sbjct 774261 TCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGTCTTGCCAGTCAGGGTCTTCA 774320
Query 34969 CAAAGATCTGCATATT 34984
| ||||||||||| ||
Sbjct 774321 CGAAGATCTGCATGTT 774336
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || | | ||| | || |||||||| || ||||||||
Sbjct 773459 TCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAAG 773518
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || ||||| ||| | || | ||||||||||| ||||| ||||| ||
Sbjct 773519 ATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--AT 773576
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | || || ||| || || | ||| ||||| || || || || |||||||
Sbjct 773577 TCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCA 773636
Query 34969 CAAAGATCTGCAT 34981
| |||||||||||
Sbjct 773637 CGAAGATCTGCAT 773649
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || | | ||| | || |||||||| || ||||| ||
Sbjct 773687 TCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAA 773746
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || ||||| ||| | || | ||||||||||| ||||| ||||| ||
Sbjct 773747 ATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--AT 773804
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | || || ||| || |||| ||| ||||| || || || || |||||||
Sbjct 773805 TCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 773864
Query 34969 CAAAGATCTGCAT 34981
| |||||||||||
Sbjct 773865 CGAAGATCTGCAT 773877
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || | | ||| | || |||||||| || ||||| ||
Sbjct 773915 TCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAA 773974
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || ||||| ||| | || | ||||||||||| ||||| ||||| ||
Sbjct 773975 ATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--AT 774032
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | || || ||| || |||| ||| ||||| || || || || |||||||
Sbjct 774033 TCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 774092
Query 34969 CAAAGATCTGCAT 34981
| |||||||||||
Sbjct 774093 CGAAGATCTGCAT 774105
>seq234
Length=227530
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | ||| || |||||||||||||| || || || |||| |||| |||
Sbjct 9927 ACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGATAGTGTTCGGCCATCTTCC 9986
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||||| || || || || | ||||| || ||| | || | || || ||||| |
Sbjct 9987 AATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGA 10046
Query 34893 ATCTTCTGTTTGACGGATGCTATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||| |||||| | | || | || | ||| || || || | |||||||| ||
Sbjct 10047 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGG-TTCGACCTCAAGAGTTATGGTCTT 10105
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| || ||||| ||||||||||||||
Sbjct 10106 GCCCGTAAGGGTCTTTACAAAGATCTGCAT 10135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324625944226680
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