Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq328 511 5e-140 >seq328 Length=165906 Score = 511 bits (566), Expect = 5e-140 Identities = 1243/1887 (66%), Gaps = 25/1887 (1%) Strand=Plus/Minus Query 46967 TTTGTCTTTT-TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAAT 47025 ||||| |||| || || ||||| | |||| ||| |||| |||||| |||||||||| Sbjct 107416 TTTGTTTTTTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAAT 107357 Query 47026 ACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAAT 47085 |||| || || |||| || |||| | ||||| || || ||||| | Sbjct 107356 ACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGT 107297 Query 47086 AACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTAT 47145 | |||| || | | ||||| ||||| || ||||| |||||||||||||||||||||| Sbjct 107296 AGTTAGGCTCGGCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTAT 107237 Query 47146 CAGCTGCCATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTG 47203 |||| ||||| || || | ||| || || ||||| ||||||||||||| | Sbjct 107236 CAGCAGCCAT--CTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATC 107179 Query 47204 TTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataatttt 47260 || | || || | | | | |||||||||| || || | || || ||||| Sbjct 107178 GCGAACATTTTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTT 107119 Query 47261 gttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATT 47320 ||||| | |||| ||| | | || ||||| |||| | |||| |||| Sbjct 107118 ATTTTTCATATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATT 107059 Query 47321 AACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTC 47380 || | ||||||||| ||||||| ||||| | ||||||||||| ||||||||||||| Sbjct 107058 GACCACTTGAAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTC 106999 Query 47381 TATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAA 47440 | ||||| ||||| || | |||||| ||||| |||||||||||||| | || ||||| Sbjct 106998 GAATGATTCGTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAA 106939 Query 47441 TAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCA-AA 47499 || ||| || | ||| | ||||| || | || ||||||||| || Sbjct 106938 CAACGAATTCCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAA 106879 Query 47500 GATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAAC 47559 | || | |||| || ||| | ||||||||| ||||| || || |||| ||| | Sbjct 106878 GTTC-GTTGGAGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTC 106820 Query 47560 CATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCAC 47619 | ||||| |||| || ||||| ||| || || ||||||||||| ||||| || || | Sbjct 106819 CTTTATAGGTTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCC 106760 Query 47620 TATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAG 47679 | |||| || ||||||||||||| | ||||| | || |||||| |||| | | Sbjct 106759 CAAAATAAATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGG 106700 Query 47680 GATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTAT 47739 || | || | || || || ||||||||||| ||||||||||| | || Sbjct 106699 GAAAACGCATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGAT 106640 Query 47740 GAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTAT 47799 | || ||| || || ||||||||| || || || | ||| || ||||| ||||||| Sbjct 106639 GCCTTAAATTGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTAT 106580 Query 47800 TTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTAT 47859 | ||| | ||| ||||||| || |||||||| |||| | Sbjct 106579 TAAGATTTTTAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAA--TGTTTT 106522 Query 47860 T-----TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATT 47914 | | | |||||| | |||||||| || || |||| ||| || ||||| | ||||| Sbjct 106521 TTCTGGTGTTACAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATC 106462 Query 47915 TGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATT 47974 || || || | | ||||| | ||||| ||||| ||||| ||||| || | ||| Sbjct 106461 AGGTGCAGAGTACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATT 106402 Query 47975 TTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTC 48034 ||| ||||| | | ||||| | ||||| ||||||| | || | |||||||| Sbjct 106401 TTGTTGATTGCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTC 106342 Query 48035 TATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAGC 48091 | || ||||| || || | ||| | | | ||| | | || | || |||| Sbjct 106341 AACTTGCGATTCTATAATGGCAAACCATAACGACTGAGC---TTTCACTGTTCGATTAGC 106285 Query 48092 TTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATC 48151 || || || ||||| ||| | | |||||||| || || | |||| | Sbjct 106284 ACGTCCCTCTTGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTG 106225 Query 48152 TAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGT 48211 | |||||||||| || ||||||||||| ||||| | |||| || || | | Sbjct 106224 AAGTCCAGGACATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTT 106165 Query 48212 CATAAATATATCTGGTATCCAAAGAGCTATAAATAA-ATCCCTAGTTCTTAGTTCTTCAT 48270 ||| || | ||| || ||||| | ||| ||||| || ||||| | || |||||| | Sbjct 106164 CATGAAAAGATCGGGAATCCATAAAGC-ATAAAAAAGATCCCGTGCTCGGTTTTCTTCTT 106106 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | ||| | || ||||| || || | ||| || | | ||| | |||||| || ||||||| Sbjct 106105 TTCCAGTGTTTCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAAT 106046 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | || || | |||| |||| ||| |||||| ||||| | ||||| || ||| | Sbjct 106045 AAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTAT 105986 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 || | ||||||| |||||| || | |||||||| |||| || ||||| | || || Sbjct 105985 TAAATACTCTTAGCATTGGAACTAATCCATTTGAAGTACCGTTCGTTCCACATATGGAAG 105926 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | || | || | ||| | || || || || ||||| || ||| || || | Sbjct 105925 TGCCTTTGGCACGAATACAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCA 105866 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| ||| || | | | |||| ||||| || ||| |||| | || | Sbjct 105865 TTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCATTGTCAAAA 105806 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 ||||||| || | ||| || || || | | | ||| | ||||| || |||| Sbjct 105805 GAAAACATGAGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCAT 105746 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| || |||||| | | || || ||||||| | | | | | ||||| | Sbjct 105745 GCGTAAAATATCGCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGTCTC 105686 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750 ||| ||||| | || || ||||||| ||| | ||| || | || ||||||| || Sbjct 105685 CATGAATACCAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTTCCCAT 105626 Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGT 48810 ||||||| | | ||| || || | || ||||| ||||||||||| || || | Sbjct 105625 TTATTTTAAGTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCGAAAT 105566 Query 48811 CGTTATCATTAATAATTGATGAATTTA 48837 | ||||| |||||| | || |||| Sbjct 105565 CACGATCATAAATAATAGCAGAGTTTA 105539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562095203993400